diff options
Diffstat (limited to 'lib/opentox-ruby-api-wrapper.rb')
| -rw-r--r-- | lib/opentox-ruby-api-wrapper.rb | 31 |
1 files changed, 26 insertions, 5 deletions
diff --git a/lib/opentox-ruby-api-wrapper.rb b/lib/opentox-ruby-api-wrapper.rb index 81a7292..001c9ac 100644 --- a/lib/opentox-ruby-api-wrapper.rb +++ b/lib/opentox-ruby-api-wrapper.rb @@ -1,4 +1,3 @@ - #['rubygems', 'rest_client', 'spork', 'helper' ].each do |lib| ['rubygems', 'rest_client', 'spork' ].each do |lib| require lib @@ -8,7 +7,7 @@ ENV['OPENTOX_COMPOUND'] = 'http://webservices.in-silico.ch/compound/v0/' unless ENV['OPENTOX_FEATURE'] = 'http://webservices.in-silico.ch/feature/v0/' unless ENV['OPENTOX_FEATURE'] ENV['OPENTOX_DATASET'] = 'http://webservices.in-silico.ch/dataset/v0/' unless ENV['OPENTOX_DATASET'] ENV['OPENTOX_FMINER'] = 'http://webservices.in-silico.ch/fminer/v0/' unless ENV['OPENTOX_FMINER'] -ENV['OPENTOX_LAZAR'] = 'http://webservices.in-silico.ch/lazar/v0/' unless ENV['OPENTOX_LAZAR'] +ENV['OPENTOX_LAZAR'] = 'http://webservices.in-silico.ch/lazar/v0/' unless ENV['OPENTOX_LAZAR'] module OpenTox @@ -19,6 +18,20 @@ module OpenTox def uri_escape(string) URI.escape(string, /[^\w]/) end + + def finished? + YAML.load(RestClient.get(@uri))[:finished] + end + + def finished + print "closing " + puts @uri + '/finished' + RestClient.post @uri + '/finished' + end + + def destroy + RestClient.delete @uri + end end class Compound < OpenTox @@ -87,11 +100,19 @@ module OpenTox def initialize(params) if params[:uri] @uri = params[:uri].to_s - elsif params[:name] + elsif params[:name] and params[:filename] + @uri = `curl -X POST -F file=@#{params[:filename]} -F name="#{params[:name]}" #{ENV['OPENTOX_DATASET']}` + elsif params[:name] @uri = RestClient.post ENV['OPENTOX_DATASET'], :name => params[:name] end end + def finished + print "closing " + puts @uri + '/finished' + RestClient.post(@uri + '/finished',nil) + end + # Get the dataset name def name RestClient.get @uri + '/name' @@ -143,8 +164,8 @@ module OpenTox def initialize(params) if params[:uri] @uri = params[:uri] - elsif params[:dataset_ur] - @uri = RestClient.post ENV['OPENTOX_LAZAR'] + 'models/' , :dataset_uri => training_dataset.uri + elsif params[:dataset_uri] + @uri = RestClient.post ENV['OPENTOX_LAZAR'] + 'models' , :dataset_uri => params[:dataset_uri] end end |