diff options
Diffstat (limited to 'lib/opentox-ruby-api-wrapper.rb')
| -rw-r--r-- | lib/opentox-ruby-api-wrapper.rb | 22 |
1 files changed, 8 insertions, 14 deletions
diff --git a/lib/opentox-ruby-api-wrapper.rb b/lib/opentox-ruby-api-wrapper.rb index db46149..4ee6fd3 100644 --- a/lib/opentox-ruby-api-wrapper.rb +++ b/lib/opentox-ruby-api-wrapper.rb @@ -1,13 +1,7 @@ -['rubygems', 'rest_client', 'spork' ].each do |lib| +['rubygems', 'rest_client', 'spork', 'environment'].each do |lib| require lib end -ENV['OPENTOX_COMPOUND'] = 'http://webservices.in-silico.ch/compound/v0/' unless ENV['OPENTOX_COMPOUND'] -ENV['OPENTOX_FEATURE'] = 'http://webservices.in-silico.ch/feature/v0/' unless ENV['OPENTOX_FEATURE'] -ENV['OPENTOX_DATASET'] = 'http://webservices.in-silico.ch/dataset/v0/' unless ENV['OPENTOX_DATASET'] -ENV['OPENTOX_FMINER'] = 'http://webservices.in-silico.ch/fminer/v0/' unless ENV['OPENTOX_FMINER'] -ENV['OPENTOX_LAZAR'] = 'http://webservices.in-silico.ch/lazar/v0/' unless ENV['OPENTOX_LAZAR'] - module OpenTox class OpenTox @@ -42,9 +36,9 @@ module OpenTox if params[:uri] @uri = params[:uri].to_s elsif params[:smiles] - @uri = RestClient.post ENV['OPENTOX_COMPOUND'] ,:smiles => uri_escape(params[:smiles]) + @uri = RestClient.post @services['opentox-compound'] ,:smiles => uri_escape(params[:smiles]) elsif params[:name] - @uri = RestClient.post ENV['OPENTOX_COMPOUND'] ,:name => uri_escape(params[:name]) + @uri = RestClient.post @services['opentox-compound'] ,:name => uri_escape(params[:name]) end end @@ -76,7 +70,7 @@ module OpenTox if params[:uri] @uri = params[:uri].to_s else - @uri = ENV['OPENTOX_FEATURE'] + uri_escape(params[:name]) + @uri = @services['opentox-feature']+ uri_escape(params[:name]) params[:values].each do |k,v| @uri += '/' + k.to_s + '/' + v.to_s end @@ -97,9 +91,9 @@ module OpenTox if params[:uri] @uri = params[:uri].to_s elsif params[:name] and params[:filename] - @uri = `curl -X POST -F file=@#{params[:filename]} -F name="#{params[:name]}" #{ENV['OPENTOX_DATASET']}` + @uri = `curl -X POST -F file=@#{params[:filename]} -F name="#{params[:name]}" #{@services['opentox-dataset']}` elsif params[:name] - @uri = RestClient.post ENV['OPENTOX_DATASET'], :name => params[:name] + @uri = RestClient.post @services['opentox-dataset'], :name => params[:name] end end @@ -139,7 +133,7 @@ module OpenTox # Create a new dataset with BBRC features def initialize(training_dataset) - @dataset_uri = RestClient.post ENV['OPENTOX_FMINER'], :dataset_uri => training_dataset.uri + @dataset_uri = RestClient.post @services['opentox-fminer'], :dataset_uri => training_dataset.uri end def dataset @@ -155,7 +149,7 @@ module OpenTox if params[:uri] @uri = params[:uri] elsif params[:dataset_uri] - @uri = RestClient.post ENV['OPENTOX_LAZAR'] + 'models' , :dataset_uri => params[:dataset_uri] + @uri = RestClient.post @services['opentox-lazar']+ 'models' , :dataset_uri => params[:dataset_uri] end end |