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Diffstat (limited to 'lib/opentox.owl')
| -rw-r--r-- | lib/opentox.owl | 809 |
1 files changed, 0 insertions, 809 deletions
diff --git a/lib/opentox.owl b/lib/opentox.owl deleted file mode 100644 index 4760055..0000000 --- a/lib/opentox.owl +++ /dev/null @@ -1,809 +0,0 @@ -<?xml version="1.0"?> -<rdf:RDF - xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" - xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#" - xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#" - xmlns:ot="http://www.opentox.org/api/1.1#" - xmlns:owl="http://www.w3.org/2002/07/owl#" - xmlns:dc="http://purl.org/dc/elements/1.1/" - xmlns:p1="http://purl.org/dc/elements/1.1/#" - xmlns:owl2xml="http://www.w3.org/2006/12/owl2-xml#" - xmlns:xsd="http://www.w3.org/2001/XMLSchema#" - xmlns:swrl="http://www.w3.org/2003/11/swrl#" - xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" - xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" - xml:base="http://www.opentox.org/api/1.1"> - <owl:Ontology rdf:about=""> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/dev/apis/api-1.1</dc:identifier> - <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >2009-11-22</dc:date> - <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >martin.guetlein@gmail.com</dc:contributor> - <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >jeliazkova.nina@gmail.com</dc:contributor> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >OpenTox resource ontology</rdfs:comment> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >OpenTox API</dc:title> - <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >OpenTox</dc:creator> - </owl:Ontology> - <owl:Class rdf:ID="Dataset"> - <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:description> - <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/dev/apis/api-1.1/dataset</rdfs:seeAlso> - <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:creator> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/dataset/{datasetid}</dc:identifier> - <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:date> - <dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Original source of the dataset</dc:source> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:title> - <dc:publisher rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:publisher> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Provides access to chemical compounds and their features (e.g. structural, physical-chemical, biological, toxicological properties)</rdfs:comment> - <owl:disjointWith> - <owl:Class rdf:ID="Feature"/> - </owl:disjointWith> - <owl:disjointWith> - <owl:Class rdf:ID="Parameter"/> - </owl:disjointWith> - <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:contributor> - <rdfs:subClassOf> - <owl:Class rdf:ID="OpentoxResource"/> - </rdfs:subClassOf> - <owl:disjointWith> - <owl:Class rdf:ID="Model"/> - </owl:disjointWith> - <owl:disjointWith> - <owl:Class rdf:ID="FeatureValuePair"/> - </owl:disjointWith> - </owl:Class> - <owl:Class rdf:ID="FeatureValue"> - <owl:disjointWith> - <owl:Class rdf:ID="Tuple"/> - </owl:disjointWith> - <rdfs:subClassOf> - <owl:Class rdf:about="#FeatureValuePair"/> - </rdfs:subClassOf> - </owl:Class> - <owl:Class rdf:about="#OpentoxResource"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A generic OpenTox resource</rdfs:comment> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >name of the resource</dc:title> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >URI of the resource</dc:identifier> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >1.1</owl:versionInfo> - </owl:Class> - <owl:Class rdf:ID="ConfusionMatrix"> - <rdfs:subClassOf> - <owl:Class rdf:ID="ClassificationStatistics"/> - </rdfs:subClassOf> - </owl:Class> - <owl:Class rdf:about="#Model"> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:title> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >TODO: Specify allowed values for model content</owl:versionInfo> - <dc:format rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >The native format of the model content (e.g. PMML, Weka model, etc.)</dc:format> - <owl:disjointWith> - <owl:Class rdf:about="#Parameter"/> - </owl:disjointWith> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >TODO: Introduce a link to User resource</owl:versionInfo> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/model/{modelid}</dc:identifier> - <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >The model creator (perhaps a link to User resource)</dc:creator> - <dc:rights rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:rights> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >The date of model creation</dc:date> - </owl:Class> - <owl:Class rdf:ID="Validation"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A validation corresponds to the validation of a model on a test dataset. The results are stored in another dataset. Parameters with default values are optional.</rdfs:comment> - <dc:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Datetime</dc:date> - <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/dev/apis/api-1.1/Validation</rdfs:seeAlso> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - </owl:Class> - <owl:Class rdf:ID="Report"> - <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/dev/apis/api-1.1/Validation#validation-report</rdfs:seeAlso> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - </owl:Class> - <owl:Class rdf:ID="Algorithm"> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >TODO: AlgorithmType, or link to Algorithm ontology</owl:versionInfo> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >1.1</owl:versionInfo> - <dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Reference</dc:source> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >TODO: statistics supported - is it possible to reuse ValidationInfo classes?</owl:versionInfo> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/algorithm/{algorithmid}</dc:identifier> - <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:description> - <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/dev/apis/api-1.1/Algorithm</rdfs:seeAlso> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Name of the algorithm</dc:title> - <owl:disjointWith> - <owl:Class rdf:about="#Feature"/> - </owl:disjointWith> - <owl:disjointWith rdf:resource="#Model"/> - <owl:disjointWith> - <owl:Class rdf:ID="Compound"/> - </owl:disjointWith> - <owl:disjointWith rdf:resource="#Dataset"/> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - <owl:disjointWith> - <owl:Class rdf:about="#Parameter"/> - </owl:disjointWith> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Provides access to OpenTox algorithms</rdfs:comment> - <dc:publisher rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:publisher> - <owl:disjointWith> - <owl:Class rdf:about="#FeatureValuePair"/> - </owl:disjointWith> - <owl:disjointWith> - <owl:Class rdf:ID="DataEntry"/> - </owl:disjointWith> - </owl:Class> - <owl:Class rdf:ID="CrossValidationInfo"> - <rdfs:subClassOf> - <owl:Class rdf:ID="ValidationInfo"/> - </rdfs:subClassOf> - </owl:Class> - <owl:Class rdf:about="#ValidationInfo"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >encapsulates validation information</rdfs:comment> - <rdfs:subClassOf rdf:resource="#Validation"/> - </owl:Class> - <owl:Class rdf:about="#Compound"> - <owl:disjointWith rdf:resource="#Model"/> - <owl:disjointWith> - <owl:Class rdf:about="#FeatureValuePair"/> - </owl:disjointWith> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/compound/{compoundid}</dc:identifier> - <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/dev/apis/api-1.1/structure</rdfs:seeAlso> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - <owl:disjointWith> - <owl:Class rdf:about="#Feature"/> - </owl:disjointWith> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >1.1</owl:versionInfo> - <owl:disjointWith> - <owl:Class rdf:about="#DataEntry"/> - </owl:disjointWith> - <owl:disjointWith> - <owl:Class rdf:about="#Parameter"/> - </owl:disjointWith> - <owl:disjointWith rdf:resource="#Dataset"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >API for OpenTox compound webservices</rdfs:comment> - </owl:Class> - <owl:Class rdf:ID="Conformer"> - <rdfs:subClassOf> - <owl:Restriction> - <owl:onProperty> - <owl:FunctionalProperty rdf:ID="has3Dstructure"/> - </owl:onProperty> - <owl:hasValue rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean" - >true</owl:hasValue> - </owl:Restriction> - </rdfs:subClassOf> - <rdfs:subClassOf rdf:resource="#Compound"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >[Optional] support for multiple (e.g. 3D) structures per chemical compound (single structure by default)</rdfs:comment> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/compound/{compoundid}/conformer/{conformerid}</dc:identifier> - </owl:Class> - <owl:Class rdf:about="#ClassificationStatistics"> - <rdfs:subClassOf rdf:resource="#ValidationInfo"/> - </owl:Class> - <owl:Class rdf:about="#FeatureValuePair"> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:identifier> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></rdfs:comment> - <owl:disjointWith> - <owl:Class rdf:about="#Parameter"/> - </owl:disjointWith> - <owl:disjointWith rdf:resource="#Model"/> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - </owl:Class> - <owl:Class rdf:about="#Feature"> - <owl:disjointWith rdf:resource="#Model"/> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >1.1</owl:versionInfo> - <dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:source> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - <owl:disjointWith rdf:resource="#FeatureValuePair"/> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/feature/{featureid}</dc:identifier> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:title> - <owl:disjointWith> - <owl:Class rdf:about="#Parameter"/> - </owl:disjointWith> - <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:description> - </owl:Class> - <owl:Class rdf:about="#Parameter"> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:title> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - </owl:Class> - <owl:Class rdf:ID="YScrambling"> - <rdfs:subClassOf rdf:resource="#ValidationInfo"/> - </owl:Class> - <owl:Class rdf:about="#DataEntry"> - <owl:disjointWith rdf:resource="#Feature"/> - <dc:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >/dataset/{datasetid}/compound/{compoundid}?feature_uri[]=featureuris</dc:identifier> - <owl:disjointWith rdf:resource="#Model"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - ></dc:title> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >1.1</owl:versionInfo> - <owl:disjointWith rdf:resource="#Parameter"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Encapsulates a dataset entry - defined by a single Compound (or conformer) and multiple FeatureValues. Could be regarded as "Compound with features"</rdfs:comment> - <owl:disjointWith rdf:resource="#FeatureValuePair"/> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - <owl:disjointWith rdf:resource="#Dataset"/> - </owl:Class> - <owl:Class rdf:ID="Task"> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - </owl:Class> - <owl:Class rdf:ID="Crossvalidation"> - <rdfs:subClassOf rdf:resource="#OpentoxResource"/> - </owl:Class> - <owl:Class rdf:ID="EmptyDataset"> - <rdfs:subClassOf rdf:resource="#Dataset"/> - </owl:Class> - <owl:Class rdf:about="#Tuple"> - <owl:disjointWith rdf:resource="#FeatureValue"/> - <rdfs:subClassOf rdf:resource="#FeatureValuePair"/> - </owl:Class> - <owl:Class rdf:ID="ClassValueStatistics"> - <rdfs:subClassOf rdf:resource="#ClassificationStatistics"/> - </owl:Class> - <owl:Class rdf:ID="ConfusionMatrixCell"> - <rdfs:subClassOf rdf:resource="#ConfusionMatrix"/> - </owl:Class> - <owl:Class rdf:ID="RegressionStatistics"> - <rdfs:subClassOf rdf:resource="#ValidationInfo"/> - </owl:Class> - <owl:ObjectProperty rdf:ID="conformer"> - <rdfs:domain rdf:resource="#Compound"/> - <rdfs:range rdf:resource="#Conformer"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="crossvalidationDataset"> - <rdfs:range rdf:resource="#Dataset"/> - <rdfs:domain rdf:resource="#Crossvalidation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="validation"> - <rdfs:range rdf:resource="#ValidationInfo"/> - <rdfs:domain rdf:resource="#Validation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="confusionMatrixPredicted"> - <rdfs:range rdf:resource="#FeatureValuePair"/> - <rdfs:domain rdf:resource="#ConfusionMatrixCell"/> - <rdfs:subPropertyOf> - <owl:ObjectProperty rdf:ID="confusionMatrixEntry"/> - </rdfs:subPropertyOf> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="validationPredictionDataset"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >PredictionDatasetURI</rdfs:comment> - <rdfs:subPropertyOf rdf:resource="#validation"/> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:range rdf:resource="#Dataset"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="validationTrainingDataset"> - <rdfs:subPropertyOf rdf:resource="#validation"/> - <rdfs:range rdf:resource="#Dataset"/> - <rdfs:domain rdf:resource="#Validation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="complexValue"> - <rdfs:range rdf:resource="#FeatureValue"/> - <rdfs:domain rdf:resource="#Tuple"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="model"> - <rdfs:domain rdf:resource="#Model"/> - <rdfs:range rdf:resource="#Dataset"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="dependentVariables"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A model can have one or more dependent variables, described as multiple features, specified by this relationship.</rdfs:comment> - <rdfs:domain rdf:resource="#Model"/> - <rdfs:subPropertyOf rdf:resource="#model"/> - <rdfs:range rdf:resource="#Feature"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="crossvalidationAlgorithm"> - <rdfs:range rdf:resource="#Algorithm"/> - <rdfs:domain rdf:resource="#Crossvalidation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="validationCrossvalidation"> - <rdfs:range rdf:resource="#Crossvalidation"/> - <rdfs:domain rdf:resource="#CrossValidationInfo"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="parameters"> - <rdfs:subPropertyOf rdf:resource="#model"/> - <rdfs:range rdf:resource="#Parameter"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Algorithms and Models can have multiple parameters</rdfs:comment> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:domain> - <owl:Class> - <owl:unionOf rdf:parseType="Collection"> - <owl:Class rdf:about="#Algorithm"/> - <owl:Class rdf:about="#Model"/> - </owl:unionOf> - </owl:Class> - </rdfs:domain> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="validationTestDataset"> - <rdfs:range rdf:resource="#Dataset"/> - <rdfs:subPropertyOf rdf:resource="#validation"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Test dataset , used in a validation exercise</rdfs:comment> - <rdfs:domain rdf:resource="#Validation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="predictedVariables"> - <rdfs:range rdf:resource="#Feature"/> - <rdfs:subPropertyOf rdf:resource="#model"/> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:domain rdf:resource="#Model"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Variables, holding the predicted values, generated by the model</rdfs:comment> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="dataEntry"> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:range rdf:resource="#DataEntry"/> - <rdfs:domain rdf:resource="#Dataset"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A Dataset contains multiple DataEntries. This property specifies the relationship between Dataset and DataEntry.</rdfs:comment> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="unscrambledDatasetURI"> - <rdfs:domain rdf:resource="#YScrambling"/> - <rdfs:subPropertyOf rdf:resource="#validation"/> - <rdfs:range rdf:resource="#Dataset"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >a link to UnscrambledDataset</dc:title> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >UnscrambledDatasetURI</rdfs:comment> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="independentVariables"> - <rdfs:domain rdf:resource="#Model"/> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A model can have multiple independent variables, described as multiple features, specified by this relationship.</rdfs:comment> - <rdfs:subPropertyOf rdf:resource="#model"/> - <rdfs:range rdf:resource="#Feature"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="hasValidationInfo"> - <rdfs:subPropertyOf rdf:resource="#validation"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Links Validation with Validation Info. One validation exercise may have multiple types of validation informaton</rdfs:comment> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:range rdf:resource="#ValidationInfo"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="predictedFeature"> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:range rdf:resource="#Feature"/> - <rdfs:subPropertyOf rdf:resource="#validation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="classValue"> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - <rdfs:range rdf:resource="#FeatureValuePair"/> - <rdfs:subPropertyOf> - <owl:ObjectProperty rdf:ID="classValueStatistics"/> - </rdfs:subPropertyOf> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:about="#confusionMatrixEntry"> - <rdfs:range rdf:resource="#ConfusionMatrixCell"/> - <rdfs:domain rdf:resource="#ConfusionMatrix"/> - <rdfs:subPropertyOf> - <owl:ObjectProperty rdf:ID="confusionMatrix"/> - </rdfs:subPropertyOf> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="report"> - <rdfs:domain rdf:resource="#Report"/> - <rdfs:range rdf:resource="#Validation"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="values"> - <rdfs:range rdf:resource="#FeatureValuePair"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A DataEntry is defined with a single compound and multiple feature values. This property sets the relationship between a DataEntry and multiple FeatureValues</rdfs:comment> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:domain rdf:resource="#DataEntry"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:about="#classValueStatistics"> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - <rdfs:range rdf:resource="#ClassValueStatistics"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:about="#confusionMatrix"> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - <rdfs:range rdf:resource="#ConfusionMatrix"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="confusionMatrixActual"> - <rdfs:domain rdf:resource="#ConfusionMatrixCell"/> - <rdfs:subPropertyOf rdf:resource="#confusionMatrixEntry"/> - <rdfs:range rdf:resource="#FeatureValuePair"/> - </owl:ObjectProperty> - <owl:ObjectProperty rdf:ID="validationReport"> - <rdfs:range rdf:resource="#Validation"/> - <rdfs:subPropertyOf rdf:resource="#report"/> - <rdfs:domain rdf:resource="#Report"/> - </owl:ObjectProperty> - <owl:DatatypeProperty rdf:ID="precision"> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numFalsePositives"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="stratified"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#boolean"/> - <rdfs:domain rdf:resource="#Crossvalidation"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numFolds"> - <rdfs:domain rdf:resource="#Crossvalidation"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="falsePositiveRate"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="fMeasure"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="yScramblingInfo"> - <rdfs:domain rdf:resource="#YScrambling"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="falseNegativeRate"> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="hasStatus"> - <rdfs:range> - <owl:DataRange> - <owl:oneOf rdf:parseType="Resource"> - <rdf:first rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Cancelled</rdf:first> - <rdf:rest rdf:parseType="Resource"> - <rdf:rest rdf:parseType="Resource"> - <rdf:first rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Running</rdf:first> - <rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/> - </rdf:rest> - <rdf:first rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Completed</rdf:first> - </rdf:rest> - </owl:oneOf> - </owl:DataRange> - </rdfs:range> - <rdfs:domain rdf:resource="#Task"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="percentUnpredicted"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:domain rdf:resource="#Validation"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="classificationStatistics"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="rSquare"> - <rdfs:subPropertyOf> - <owl:DatatypeProperty rdf:ID="regressionStatistics"/> - </rdfs:subPropertyOf> - <rdfs:domain rdf:resource="#RegressionStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="truePositiveRate"> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="percentWithoutClass"> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numWithoutClass"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdfs:domain rdf:resource="#Validation"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="paramValue"> - <rdfs:domain rdf:resource="#Parameter"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Parameter value</dc:title> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >The value of a Parameter</rdfs:comment> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="statisticsSupported"> - <rdfs:domain rdf:resource="#Algorithm"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numUnpredicted"> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="crossValidationInfo"> - <rdfs:domain rdf:resource="#CrossValidationInfo"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:about="#regressionStatistics"> - <rdfs:domain rdf:resource="#RegressionStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numTrueNegatives"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="recall"> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numInstances"> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numFalseNegatives"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="units"> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Units</dc:title> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Units for a feature value</rdfs:comment> - <owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >TODO: make use of units ontology</owl:versionInfo> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="areaUnderROC"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="randomSeed"> - <rdfs:domain rdf:resource="#Crossvalidation"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#long"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="trueNegativeRate"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="confusionMatrixValue"> - <rdfs:domain rdf:resource="#ConfusionMatrixCell"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - </owl:DatatypeProperty> - <owl:DatatypeProperty rdf:ID="numTruePositives"> - <rdfs:domain rdf:resource="#ClassValueStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - </owl:DatatypeProperty> - <owl:TransitiveProperty rdf:ID="isA"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Allows to define "is a" relationships outside of particular class hierarchy</rdfs:comment> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - </owl:TransitiveProperty> - <owl:FunctionalProperty rdf:ID="validationModel"> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Model used in a validation exercise</rdfs:comment> - <rdfs:subPropertyOf rdf:resource="#validation"/> - <rdfs:range rdf:resource="#Model"/> - <rdfs:domain rdf:resource="#Validation"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="numIncorrect"> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Number incorrect</dc:title> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdfs:subPropertyOf rdf:resource="#classificationStatistics"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="percentCorrect"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Percent Correct</dc:title> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - <rdfs:subPropertyOf rdf:resource="#classificationStatistics"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="rootMeanSquaredError"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >RootMeanSquaredError</rdfs:comment> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - <rdfs:subPropertyOf rdf:resource="#regressionStatistics"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="yScramblingEnabled"> - <rdfs:subPropertyOf rdf:resource="#yScramblingInfo"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - <rdfs:domain rdf:resource="#YScrambling"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >YScramblingEnabled</dc:title> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#boolean"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >YScramblingEnabled</rdfs:comment> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="yScramblingSeed"> - <rdfs:subPropertyOf rdf:resource="#yScramblingInfo"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >YScramblingSeed</dc:title> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >YScramblingSeed</rdfs:comment> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - <rdfs:domain rdf:resource="#YScrambling"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="fold"> - <rdfs:domain rdf:resource="#CrossValidationInfo"/> - <rdfs:subPropertyOf rdf:resource="#crossValidationInfo"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:about="#has3Dstructure"> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Has 3D structure</dc:title> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#boolean"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >True, if the compound has 3D structure</rdfs:comment> - <rdfs:domain rdf:resource="#Compound"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="value"> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Literal</rdfs:comment> - <rdfs:domain rdf:resource="#FeatureValue"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Feature value</dc:title> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="trainingDataset"> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - <rdfs:domain rdf:resource="#Model"/> - <rdfs:subPropertyOf rdf:resource="#model"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A model is derived by applying an Algorithm on a training Dataset.</rdfs:comment> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:range rdf:resource="#Dataset"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="realRuntime"> - <rdfs:domain rdf:resource="#Validation"/> - <rdfs:domain rdf:resource="#Crossvalidation"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#long"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="algorithm"> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >The algorithm, used to create the Model</rdfs:comment> - <rdfs:range rdf:resource="#Algorithm"/> - <rdfs:subPropertyOf rdf:resource="#model"/> - <rdfs:domain rdf:resource="#Model"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="numCorrect"> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#int"/> - <rdfs:subPropertyOf rdf:resource="#classificationStatistics"/> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Number correct</dc:title> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="hasSource"> - <rdfs:domain rdf:resource="#Feature"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - <rdfs:range> - <owl:Class> - <owl:unionOf rdf:parseType="Collection"> - <owl:Class rdf:about="#Algorithm"/> - <owl:Class rdf:about="#Dataset"/> - <owl:Class rdf:about="#Model"/> - </owl:unionOf> - </owl:Class> - </rdfs:range> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="paramScope"> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >specifies if a parameter is optional or mandatory</rdfs:comment> - <rdfs:domain rdf:resource="#Parameter"/> - <rdfs:range> - <owl:DataRange> - <owl:oneOf rdf:parseType="Resource"> - <rdf:rest rdf:parseType="Resource"> - <rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/> - <rdf:first rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >optional</rdf:first> - </rdf:rest> - <rdf:first rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >mandatory</rdf:first> - </owl:oneOf> - </owl:DataRange> - </rdfs:range> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Parameter scope</dc:title> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="percentageCompleted"> - <rdfs:domain rdf:resource="#Task"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Percentage completed</dc:title> - <rdfs:subPropertyOf rdf:resource="#classificationStatistics"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="compound"> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - <rdfs:range rdf:resource="#Compound"/> - <rdfs:domain rdf:resource="#DataEntry"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >A DataEntry is defined with a single compound and multiple feature values. This property sets the relationship between a DataEntry and a Compound</rdfs:comment> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="percentIncorrect"> - <rdfs:subPropertyOf rdf:resource="#classificationStatistics"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - <dc:title rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >Percent Incorrect</dc:title> - <rdfs:domain rdf:resource="#ClassificationStatistics"/> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="meanAbsolutError"> - <rdfs:subPropertyOf rdf:resource="#regressionStatistics"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >MeanAbsolutError</rdfs:comment> - <rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#float"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#DatatypeProperty"/> - </owl:FunctionalProperty> - <owl:FunctionalProperty rdf:ID="feature"> - <rdfs:range rdf:resource="#Feature"/> - <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >FeatureValue contains a value for specific Feature, specified by this relationship.</rdfs:comment> - <rdfs:domain rdf:resource="#FeatureValuePair"/> - <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#ObjectProperty"/> - <rdfs:isDefinedBy rdf:datatype="http://www.w3.org/2001/XMLSchema#string" - >http://opentox.org/api/1.1</rdfs:isDefinedBy> - </owl:FunctionalProperty> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/date"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/identifier"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/rights"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/publisher"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/format"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/> - <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/> -</rdf:RDF> - -<!-- Created with Protege (with OWL Plugin 3.4.1, Build 536) http://protege.stanford.edu --> |