1 files changed, 0 insertions, 73 deletions
diff --git a/lib/utils/rdf/dataset.rb b/lib/utils/rdf/dataset.rb
deleted file mode 100644
index 2cb32a9..0000000
--- a/lib/utils/rdf/dataset.rb
+++ /dev/null
@@ -1,73 +0,0 @@
-=begin
-* Name: dataset.rb
-* Description: Dataset RDF tools
-* Author: Andreas Maunz <andreas@maunz.de>
-* Date: 10/2012
-=end
-
-module OpenTox
-  class Dataset
-
-    # Load features via RDF (slow)
-    # @param [String] uri Dataset URI
-    # @return [Array] features Features in order
-    def find_features_rdf
-      query = RDF::Query.new do
-        pattern [:uri, RDF.type, RDF::OT.Feature]
-        pattern [:uri, RDF::OLO.index, :idx]
-      end
-      query.execute(@rdf).sort_by{|s| s.idx}.collect{|s| OpenTox::Feature.new(s.uri.to_s)}
-    end
-
-    # Load compounds via RDF (slow)
-    # @param [String] uri Dataset URI
-    # @return [Array] compounds Compounds in order
-    def find_compounds_rdf
-      query = RDF::Query.new do
-        pattern [:uri, RDF.type, RDF::OT.Compound]
-        pattern [:uri, RDF::OLO.index, :idx]
-      end
-      query.execute(@rdf).sort_by{|s| s.idx}.collect{|s| OpenTox::Compound.new(s.uri.to_s)}
-    end
-
-    # Load data entries via RDF (slow)
-    # @param [String] uri Dataset uri
-    # @return [Array] entries Data entries, ordered primarily over cols and secondarily over rows
-    def find_data_entries_rdf
-      query = RDF::Query.new do
-        pattern [:data_entry, RDF::OLO.index, :cidx] # compound index: now a free variable
-        pattern [:data_entry, RDF::OT.values, :vals]
-        pattern [:vals, RDF::OT.feature, :f]
-        pattern [:f, RDF::OLO.index, :fidx]
-        pattern [:vals, RDF::OT.value, :val]
-      end
-      query.execute(@rdf).order_by(:fidx, :cidx).collect { |s| s.val.to_s }
-    end
-
-    # Query a dataset URI for ordered status 
-    # by loading its metadata (OpenTox compliant)
-    # @param [String] uri Dataset uri
-    # @return [TrueClass, FalseClass] status Whether the dataset is ordered
-    def self.ordered?(uri)
-      ds = OpenTox::Dataset.new # dummy 
-      ds.parse_rdfxml(RestClient.get([uri,"metadata"].join("/"),{:accept => "application/rdf+xml"}))
-      query = RDF::Query.new do
-        pattern [:dataset, RDF.type, RDF::OT.OrderedDataset]
-      end
-      query.execute(ds.rdf).size>0
-    end
-
-    # Load dataset URI from given RDF (slow)
-    # @param [String] rdf RDF
-    # @return [String] uri URI
-    def self.uri_from_rdf(rdf)
-      ds = OpenTox::Dataset.new # dummy 
-      ds.parse_rdfxml(rdf)
-      query = RDF::Query.new do
-        pattern [:dataset, RDF.type, RDF::OT.Dataset]
-      end
-      query.execute(ds.rdf).collect { |s| s.dataset.to_s }[0]
-    end
-
-  end
-end