1 files changed, 0 insertions, 38 deletions
diff --git a/lib/utils/shims/dataset.rb b/lib/utils/shims/dataset.rb
index b5faf18..912510c 100644
--- a/lib/utils/shims/dataset.rb
+++ b/lib/utils/shims/dataset.rb
@@ -23,44 +23,6 @@ module OpenTox
     end
 
 
-    # Load features via SPARQL (fast)
-    # @param [String] Dataset URI
-    # @return [Array] Features in order
-    def self.find_features(uri)
-      sparql = "SELECT DISTINCT ?s FROM <#{uri}> WHERE {
-        ?s <#{RDF.type}> <#{RDF::OT.Feature}> ;
-           <#{RDF::OLO.index}> ?fidx
-        } ORDER BY ?fidx"
-      OpenTox::Backend::FourStore.query(sparql, "text/uri-list").split("\n").collect { |uri| OpenTox::Feature.new uri.strip }
-    end
-
-    # Load compounds via SPARQL (fast)
-    # @param [String] Dataset URI
-    # @return [Array] Compounds in order
-    def self.find_compounds(uri)
-      sparql = "SELECT DISTINCT ?compound FROM <#{uri}> WHERE {
-        ?s <#{RDF.type}> <#{RDF::OT.DataEntry}> ;
-           <#{RDF::OLO.index}> ?cidx;
-           <#{RDF::OT.compound}> ?compound
-        } ORDER BY ?cidx"
-      OpenTox::Backend::FourStore.query(sparql, "text/uri-list").split("\n").collect { |uri| OpenTox::Compound.new uri.strip }
-    end
-
-    # Load data entries via SPARQL (fast)
-    # @param [String] Dataset uri
-    # @return [Array] Data entries, ordered primarily over rows and secondarily over cols
-    def self.find_data_entries(uri)
-      sparql = "SELECT ?value FROM <#{uri}> WHERE {
-        ?data_entry <#{RDF::OLO.index}> ?cidx ;
-                    <#{RDF::OT.values}> ?v .
-        ?v          <#{RDF::OT.feature}> ?f;
-                    <#{RDF::OT.value}> ?value .
-        ?f          <#{RDF::OLO.index}> ?fidx.
-        } ORDER BY ?cidx ?fidx"
-      OpenTox::Backend::FourStore.query(sparql,"text/uri-list").split("\n").collect { |val| val.strip }
-    end
-
-
     ### Index Structures
 
     # Create value map