1 files changed, 0 insertions, 29 deletions
diff --git a/models/mutagenicity/download/efsa_classification.rb b/models/mutagenicity/download/efsa_classification.rb
deleted file mode 100755
index 1e4dace..0000000
--- a/models/mutagenicity/download/efsa_classification.rb
+++ /dev/null
@@ -1,29 +0,0 @@
-#!/usr/bin/env ruby
-require 'csv'
-require_relative "../../../lib/compound.rb"
-
-# convert EFSA data to mutagenicity classifications
-i = 0
-db = {}
-CSV.foreach(ARGV[0], :encoding => "UTF-8", :col_sep => "\t", :liberal_parsing => true) do |row|
-  if i > 0 and row[11] and !row[11].empty? and row[24].match(/Salmonella/i) and ( row[25].match("TA 98") or row[25].match("TA 100") ) and row[33]
-    begin
-      c = Compound.from_smiles(row[11].gsub('"','')).smiles
-    rescue
-      c = Compound.from_inchi(row[12]).smiles # some smiles (row[11]) contain non-parseable characters
-    end
-    db[c] ||= {}
-    db[c][:id] ||= row[2]
-    if row[33].match(/Positiv/i)
-      db[c][:value] = "mutagenic" # at least one positive result in TA 98 or TA 100
-    elsif row[33].match(/Negativ/i)
-      db[c][:value] ||= "non-mutagenic"
-    end
-  end
-  i += 1
-end
-
-puts "ID,SMILES,Mutagenicity"
-db.each do |s,v|
-  puts [v[:id],s,v[:value]].join ","
-end