1 files changed, 0 insertions, 41 deletions
diff --git a/test/classification.rb b/test/classification.rb
deleted file mode 100644
index bedbe14..0000000
--- a/test/classification.rb
+++ /dev/null
@@ -1,41 +0,0 @@
-require_relative "setup.rb"
-
-class LazarClassificationTest < MiniTest::Test
-
-  def test_lazar_classification
-    training_dataset = Dataset.from_csv_file File.join(DATA_DIR,"hamster_carcinogenicity.csv")
-    model = Model::LazarClassification.create training_dataset
-
-    [ {
-      :compound => OpenTox::Compound.from_inchi("InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H"),
-      :prediction => "false",
-      :confidence => 0.25281385281385277,
-      :nr_neighbors => 11
-    },{
-      :compound => OpenTox::Compound.from_smiles("c1ccccc1NN"),
-      :prediction => "false",
-      :confidence => 0.3639589577089577,
-      :nr_neighbors => 14
-    } ].each do |example|
-      prediction = model.predict example[:compound]
-      assert_equal example[:prediction], prediction[:value]
-      #assert_equal example[:confidence], prediction[:confidence]
-      #assert_equal example[:nr_neighbors], prediction[:neighbors].size
-    end
-
-    compound = Compound.from_smiles "CCO"
-    prediction = model.predict compound
-    assert_equal ["false"], prediction[:database_activities]
-    assert_equal "true", prediction[:value]
-
-    # make a dataset prediction
-    compound_dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"EPAFHM.mini.csv")
-    prediction = model.predict compound_dataset
-    assert_equal compound_dataset.compounds, prediction.compounds
-
-    assert_equal "Could not find similar compounds with experimental data in the training dataset.", prediction.data_entries[7][3]
-    assert_equal "1 compounds have been removed from neighbors, because they have the same structure as the query compound.", prediction.data_entries[14][3]
-    # cleanup
-    [training_dataset,model,compound_dataset].each{|o| o.delete}
-  end
-end