diff options
Diffstat (limited to 'test/dataset.rb')
| -rw-r--r-- | test/dataset.rb | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/test/dataset.rb b/test/dataset.rb index 4f1e885..297251e 100644 --- a/test/dataset.rb +++ b/test/dataset.rb @@ -8,7 +8,7 @@ class DatasetTest < MiniTest::Test d1 = Dataset.new d1.save datasets = Dataset.all - assert_equal Dataset, datasets.first.class + assert datasets.first.is_a?(Dataset), "#{datasets.first} is not a Dataset." d1.delete end @@ -69,7 +69,7 @@ class DatasetTest < MiniTest::Test assert_equal 3, d.compounds.size assert_equal 2, d.features.size assert_equal [[1,2],[4,5],[6,7]], d.data_entries - d.save_all + d.save # check if dataset has been saved correctly new_dataset = Dataset.find d.id assert_equal 3, new_dataset.compounds.size @@ -127,7 +127,7 @@ class DatasetTest < MiniTest::Test original_csv.shift csv.each_with_index do |row,i| compound = Compound.from_smiles row.shift - original_compound = Compound.from_smiles original_csv[i].shift + original_compound = Compound.from_smiles original_csv[i].shift.strip assert_equal original_compound.inchi, compound.inchi row.each_with_index do |v,j| if v.numeric? @@ -142,7 +142,6 @@ class DatasetTest < MiniTest::Test def test_from_csv d = Dataset.from_csv_file "#{DATA_DIR}/hamster_carcinogenicity.csv" - p d assert_equal Dataset, d.class assert_equal 1, d.features.size assert_equal 85, d.compounds.size @@ -170,8 +169,7 @@ class DatasetTest < MiniTest::Test def test_from_csv2 File.open("#{DATA_DIR}/temp_test.csv", "w+") { |file| file.write("SMILES,Hamster\nCC=O,true\n ,true\nO=C(N),true") } dataset = Dataset.from_csv_file "#{DATA_DIR}/temp_test.csv" - p dataset.warnings - assert_equal "Cannot parse SMILES compound ' ' at position 3, all entries are ignored.", dataset.warnings.join + assert_equal "Cannot parse SMILES compound '' at position 3, all entries are ignored.", dataset.warnings.join File.delete "#{DATA_DIR}/temp_test.csv" dataset.features.each{|f| feature = Feature.find f.id; feature.delete} dataset.delete @@ -205,14 +203,16 @@ class DatasetTest < MiniTest::Test assert_equal 0.00323, d2.data_entries[5][0] end - def test_scaled_dataset - original_dataset = Dataset.from_csv_file File.join(DATA_DIR,"EPAFHM.mini.csv") - scaled_dataset = original_dataset.scale - scaled_dataset.data_entries.each_with_index do |row,i| - row.each_with_index do |value,j| - assert_equal original_dataset.data_entries[i][j].round(4), scaled_dataset.original_value(value,j).round(4) if value # ignore nils + def test_folds + dataset = Dataset.from_csv_file File.join(DATA_DIR,"loael.csv") + dataset.folds(10).each do |fold| + fold.each do |d| + assert_equal d.data_entries.size, d.compound_ids.size + assert_operator d.compound_ids.size, :>=, d.compound_ids.uniq.size end + assert_operator fold[0].compound_ids.uniq.size, :>=, fold[1].compound_ids.uniq.size end + #puts dataset.folds 10 end end |