summaryrefslogtreecommitdiff
path: root/test/descriptor-long.rb
diff options
context:
space:
mode:
Diffstat (limited to 'test/descriptor-long.rb')
-rw-r--r--test/descriptor-long.rb26
1 files changed, 0 insertions, 26 deletions
diff --git a/test/descriptor-long.rb b/test/descriptor-long.rb
deleted file mode 100644
index 7a4c00f..0000000
--- a/test/descriptor-long.rb
+++ /dev/null
@@ -1,26 +0,0 @@
-require_relative "setup.rb"
-class DescriptorLongTest < MiniTest::Test
-
- def test_dataset_all
- # TODO: improve CDK descriptor calculation speed or add timeout
- skip "CDK descriptor calculation takes too long for some compounds"
- dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"hamster_carcinogenicity.mini.csv")
- d = OpenTox::Algorithm::Descriptor.physchem dataset
- assert_equal dataset.compounds, d.compounds
- assert_equal 332, d.features.size
- assert_equal 332, d.data_entries.first.size
- d.delete
- end
-
- def test_dataset_openbabel
- # TODO: improve CDK descriptor calculation speed or add timeout
- dataset = Dataset.from_csv_file File.join(DATA_DIR,"hamster_carcinogenicity.mini.csv")
- d = Algorithm::Descriptor.physchem dataset, Algorithm::Descriptor::OBDESCRIPTORS.keys
- assert_equal dataset.compounds, d.compounds
- size = Algorithm::Descriptor::OBDESCRIPTORS.keys.size
- assert_equal size, d.features.size
- assert_equal size, d.data_entries.first.size
- d.delete
- end
-
-end