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-rw-r--r--test/fminer-long.rb38
1 files changed, 0 insertions, 38 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb
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--- a/test/fminer-long.rb
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-require_relative "setup.rb"
-
-class FminerTest < MiniTest::Test
-
- def test_fminer_multicell
- #skip "multicell segfaults"
- # TODO aborts, probably fminer
- # or OpenBabel segfault
- dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv")
- feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
- p feature_dataset.training_parameters
- assert_equal dataset.compound_ids, feature_dataset.compound_ids
- dataset.delete
- feature_dataset.delete
- end
-
- def test_fminer_isscan
- dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv")
- feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
- assert_equal feature_dataset.compounds.size, dataset.compounds.size
- p feature_dataset.features.size
- p feature_dataset.training_parameters
- dataset.delete
- feature_dataset.delete
- end
-
- def test_fminer_kazius
- dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv")
- # TODO reactivate default settings
- feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20)
- assert_equal feature_dataset.compounds.size, dataset.compounds.size
- feature_dataset = Dataset.find feature_dataset.id
- assert feature_dataset.data_entries.size, dataset.compounds.size
- dataset.delete
- feature_dataset.delete
- end
-
-end