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-rw-r--r--test/fminer-long.rb37
1 files changed, 37 insertions, 0 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb
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+require_relative "setup.rb"
+
+class FminerTest < MiniTest::Test
+
+ def test_fminer_multicell
+ skip "multicell segfaults"
+ # TODO aborts, probably fminer
+ # or OpenBabel segfault
+ dataset = OpenTox::Dataset.new
+ #multi_cell_call.csv
+ dataset.upload File.join(DATA_DIR,"multi_cell_call.csv")
+ feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
+ dataset.delete
+ feature_dataset.delete
+ end
+
+ def test_fminer_isscan
+ dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv")
+ feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
+ assert_equal feature_dataset.compounds.size, dataset.compounds.size
+ p feature_dataset
+ dataset.delete
+ feature_dataset.delete
+ end
+
+ def test_fminer_kazius
+ dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv")
+ # TODO reactivate default settings
+ feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20)
+ assert_equal feature_dataset.compounds.size, dataset.compounds.size
+ feature_dataset = Dataset.find feature_dataset.id
+ assert feature_dataset.data_entries.size, dataset.compounds.size
+ dataset.delete
+ feature_dataset.delete
+ end
+
+end