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-rw-r--r--test/fminer-long.rb11
1 files changed, 6 insertions, 5 deletions
diff --git a/test/fminer-long.rb b/test/fminer-long.rb
index 826f206..0f202b4 100644
--- a/test/fminer-long.rb
+++ b/test/fminer-long.rb
@@ -3,13 +3,13 @@ require_relative "setup.rb"
class FminerTest < MiniTest::Test
def test_fminer_multicell
- skip "multicell segfaults"
+ #skip "multicell segfaults"
# TODO aborts, probably fminer
# or OpenBabel segfault
- dataset = OpenTox::Dataset.new
- #multi_cell_call.csv
- dataset.upload File.join(DATA_DIR,"multi_cell_call.csv")
+ dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
+ p feature_dataset.training_parameters
+ assert_equal dataset.compound_ids, feature_dataset.compound_ids
dataset.delete
feature_dataset.delete
end
@@ -18,7 +18,8 @@ class FminerTest < MiniTest::Test
dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
assert_equal feature_dataset.compounds.size, dataset.compounds.size
- p feature_dataset
+ p feature_dataset.features.size
+ p feature_dataset.training_parameters
dataset.delete
feature_dataset.delete
end