diff options
Diffstat (limited to 'test')
| -rw-r--r-- | test/regression.rb (renamed from test/lazar-regression.rb) | 21 |
1 files changed, 6 insertions, 15 deletions
diff --git a/test/lazar-regression.rb b/test/regression.rb index ae8f725..fa3b7fb 100644 --- a/test/lazar-regression.rb +++ b/test/regression.rb @@ -21,18 +21,13 @@ class LazarRegressionTest < MiniTest::Test assert_equal 3, prediction[:neighbors].size end - def test_local_pls_regression + def test_local_fingerprint_regression training_dataset = Dataset.from_csv_file "#{DATA_DIR}/EPAFHM.medi.csv" - model = Model::LazarRegression.create training_dataset + model = Model::LazarRegression.create(training_dataset, :prediction_algorithm => "OpenTox::Algorithm::Regression.local_fingerprint_regression") compound = Compound.from_smiles "NC(=O)OCCC" prediction = model.predict compound - p prediction - model.update(:prediction_algorithm => "OpenTox::Algorithm::Regression.local_pls_regression") - prediction = model.predict compound - p prediction - #assert_equal 13.6, prediction[:value].round(1) - #assert_equal 0.83, prediction[:confidence].round(2) - #assert_equal 1, prediction[:neighbors].size + p prediction[:value] + refute_nil prediction[:value] end def test_local_physchem_regression @@ -40,12 +35,8 @@ class LazarRegressionTest < MiniTest::Test model = Model::LazarRegression.create(training_dataset, :prediction_algorithm => "OpenTox::Algorithm::Regression.local_physchem_regression") compound = Compound.from_smiles "NC(=O)OCCC" prediction = model.predict compound - model.update(:prediction_algorithm => "OpenTox::Algorithm::Regression.local_pls_regression") - prediction = model.predict compound - # TODO assertions - #assert_equal 13.6, prediction[:value].round(1) - #assert_equal 0.83, prediction[:confidence].round(2) - #assert_equal 1, prediction[:neighbors].size + p prediction[:value] + refute_nil prediction[:value] end end |