From 9a3351d18986f54db6f8f3fe118fb34ea4baec23 Mon Sep 17 00:00:00 2001
From: gebele <gebele@in-silico.ch>
Date: Tue, 14 Nov 2017 11:07:11 +0100
Subject: removed rinstall

---
 ext/lazar/Makefile   |  5 -----
 ext/lazar/extconf.rb | 32 --------------------------------
 ext/lazar/rinstall.R | 12 ------------
 3 files changed, 49 deletions(-)
 delete mode 100644 ext/lazar/Makefile
 delete mode 100644 ext/lazar/extconf.rb
 delete mode 100644 ext/lazar/rinstall.R

diff --git a/ext/lazar/Makefile b/ext/lazar/Makefile
deleted file mode 100644
index 1d51914..0000000
--- a/ext/lazar/Makefile
+++ /dev/null
@@ -1,5 +0,0 @@
-all:
-	true
-
-install:
-	true
diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb
deleted file mode 100644
index 9997106..0000000
--- a/ext/lazar/extconf.rb
+++ /dev/null
@@ -1,32 +0,0 @@
-require 'fileutils'
-require 'rbconfig'
-require 'mkmf'
-
-main_dir = File.expand_path(File.join(File.dirname(__FILE__),"..",".."))
-
-# check for required programs
-programs = ["R","Rscript","mongod","java","getconf"]
-programs.each do |program|
-  abort "Please install #{program} on your system." unless find_executable program
-end
-
-abort "Please install Rserve on your system. Execute 'install.packages('Rserve')' in a R console running as root ('sudo R')."  unless `R CMD Rserve --version`.match(/^Rserve/)
-
-# install R packages
-r_dir = File.join main_dir, "R"
-FileUtils.mkdir_p r_dir
-#FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary
-rinstall = File.expand_path(File.join(File.dirname(__FILE__),"rinstall.R"))
-puts `Rscript --vanilla #{rinstall} #{r_dir}`
-
-r_libs = Dir[File.join(r_dir,"*")].collect{|l| l.sub(r_dir, '').sub('/','')}.sort
-["caret","doMC","foreach","ggplot2","gridExtra","iterators","pls"].each do |lib|
-  abort "Failed to install R package '#{lib}'." unless r_libs.include?(lib)
-end
-
-# create a fake Makefile
-File.open(File.join(File.dirname(__FILE__),"Makefile"),"w+") do |makefile|
-  makefile.puts "all:\n\ttrue\n\ninstall:\n\ttrue\n"
-end
-
-$makefile_created = true
diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R
deleted file mode 100644
index 98e612d..0000000
--- a/ext/lazar/rinstall.R
+++ /dev/null
@@ -1,12 +0,0 @@
-libdir = commandArgs(trailingOnly=TRUE)[1]
-repo = "https://stat.ethz.ch/CRAN/"
-#install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE)
-install.packages("stringi",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("iterators",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("foreach",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("gridExtra",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("ggplot2",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("pls",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("randomForest",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("caret",lib=libdir,repos=repo,dependencies=TRUE);
-install.packages("doMC",lib=libdir,repos=repo,dependencies=TRUE);
-- 
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