From 6117375fdc800fd071fc4983896c26700bf2acd7 Mon Sep 17 00:00:00 2001 From: gebele Date: Mon, 21 Mar 2016 09:50:12 +0000 Subject: added install script for R packages, updated README with install instructions; changed plot format from svg to png --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'README.md') diff --git a/README.md b/README.md index e0b17d1..4de5a12 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ Dependencies lazar depends on a couple of external programs and libraries. On Debian 7 "Wheezy" systems you can install them with - `sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev r-cran-rserve openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev` + `sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev` You will also need at least mongodb version 3.0, but Debian "Wheezy" provides version 2.4. Please follow the instructions at http://docs.mongodb.org/manual/tutorial/install-mongodb-on-debian/: @@ -30,6 +30,7 @@ Installation git clone https://github.com/opentox/lazar.git cd lazar ruby ext/lazar/extconf.rb + sudo Rscript ext/lazar/rinstall.R bundle install ``` -- cgit v1.2.3