From 64354959e04fcac11bcf70e75099691b74573033 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Tue, 16 Aug 2011 14:46:31 +0200
Subject: initial minimal version

---
 bin/opentox-install-debian.sh | 105 ------------------------------------------
 1 file changed, 105 deletions(-)
 delete mode 100644 bin/opentox-install-debian.sh

(limited to 'bin/opentox-install-debian.sh')

diff --git a/bin/opentox-install-debian.sh b/bin/opentox-install-debian.sh
deleted file mode 100644
index cf173da..0000000
--- a/bin/opentox-install-debian.sh
+++ /dev/null
@@ -1,105 +0,0 @@
-#!/bin/bash
-#Installation is tested on Debian Lenny Ubuntu 9.04
-#Update the system
-
-ERRLOG='install_err.log'
-INSTALLLOG='install_log.log'
-DATE=$(date +%Y/%m/%d\ %H:%M:%S)
-
-echo "================================================="
-echo "Please enshure that the sudo package is installed"
-echo "on your system. "
-echo "On Ubuntu Linux sudo is installed by default."
-echo "If you are unshure check with it 'sudo ls'"
-echo "and installed it with 'apt-get install sudo'"
-echo "and add your username with visudo."
-echo "================================================="
-echo -n "To continue installation press y: "
-read answer
-if [ "$answer" != "y" ]
-then
-  echo "exiting the script..."
-  exit 1
-fi
-
-echo "opentox webservice install log - " $DATE > $INSTALLLOG
-echo "Installing: build-essential"
-sudo apt-get install build-essential >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing: ruby 1.8 with its dev files"
-sudo apt-get install ruby ruby1.8-dev >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing: gems rdoc rubygems and rake"
-sudo apt-get install gems rdoc rubygems rake >> $INSTALLLOG 2>>$ERRLOG
-
-echo "Installing rubygems from source. This may take some time"
-wget http://rubyforge.org/frs/download.php/60718/rubygems-1.3.5.tgz >> $INSTALLLOG 2>>$ERRLOG
-tar xzfv rubygems-1.3.5.tgz 2>>$ERRLOG
-cd rubygems-1.3.5 >> $INSTALLLOG 2>>$ERRLOG
-sudo ruby setup.rb 2>>$ERRLOG
-cd ..
-
-echo "Adding http://gems.github.com to ruby gem sources"
-sudo gem sources -a http://gems.github.com >> $INSTALLLOG 2>>$ERRLOG
-
-#for debian lenny:
-echo "Installing packages: zlib1g-dev tcl curl perl ssh tcl tk8.5"
-sudo apt-get install zlib1g-dev tcl curl perl ssh tcl tk8.5  >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing git from source"
-wget http://www.kernel.org/pub/software/scm/git/git-1.6.5.2.tar.gz >> $INSTALLLOG 2>>$ERRLOG
-tar xzfv git-1.6.5.2.tar.gz  2>>$ERRLOG
-cd git-1.6.5.2 >> $INSTALLLOG 2>>$ERRLOG
-./configure 2>>$ERRLOG
-make 2>>$ERRLOG
-make install 2>>$ERRLOG
-
-echo "Installing the opentox webservices"
-mkdir webservices >> $INSTALLLOG 2>>$ERRLOG
-cd webservices >> $INSTALLLOG 2>>$ERRLOG
-
-git clone git://github.com/helma/opentox-compound.git >> $INSTALLLOG 2>>$ERRLOG
-git clone git://github.com/helma/opentox-feature.git >> $INSTALLLOG 2>>$ERRLOG
-git clone git://github.com/helma/opentox-dataset.git >> $INSTALLLOG 2>>$ERRLOG
-git clone git://github.com/helma/opentox-algorithm.git >> $INSTALLLOG 2>>$ERRLOG
-git clone git://github.com/helma/opentox-model.git >> $INSTALLLOG 2>>$ERRLOG
-git clone git://github.com/helma/opentox-test.git  >> $INSTALLLOG 2>>$ERRLOG
-
-cd opentox-compound >> $INSTALLLOG 2>>$ERRLOG
-git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG
-cd ../opentox-feature >> $INSTALLLOG 2>>$ERRLOG
-git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG
-cd ../opentox-dataset >> $INSTALLLOG 2>>$ERRLOG
-git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG
-cd ../opentox-algorithm >> $INSTALLLOG 2>>$ERRLOG
-git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG
-cd ../opentox-model >> $INSTALLLOG 2>>$ERRLOG
-git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG
-cd .. >> $INSTALLLOG 2>>$ERRLOG
-git clone git://github.com/helma/opentox-ruby-api-wrapper.git >> $INSTALLLOG 2>>$ERRLOG
-cd opentox-ruby-api-wrapper >> $INSTALLLOG 2>>$ERRLOG
-git checkout -b development origin/development >> $INSTALLLOG 2>>$ERRLOG
-rake install >> $INSTALLLOG 2>>$ERRLOG
-
-
-cd ../opentox-compound >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing libopenssl-ruby"
-sudo apt-get install libopenssl-ruby >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing dtach"
-rake dtach:install >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing openbabel"
-rake openbabel:install >> $INSTALLLOG 2>>$ERRLOG
-
-#debian lenny missed liblink:
-ln -s /usr/local/lib/libopenbabel.so.3 /usr/lib/libopenbabel.so.3 >> $INSTALLLOG 2>>$ERRLOG
-
-rake redis:download >> $INSTALLLOG 2>>$ERRLOG
-rake redis:install >> $INSTALLLOG 2>>$ERRLOG
-#edit /home/[username]/.opentox/config/test.yaml set :base_dir: /home/[username]/webservices
-sudo apt-get install libgsl0-dev >> $INSTALLLOG 2>>$ERRLOG
-sudo apt-get install swig >> $INSTALLLOG 2>>$ERRLOG
-sudo apt-get install curl >> $INSTALLLOG 2>>$ERRLOG
-cd ../opentox-algorithm >> $INSTALLLOG 2>>$ERRLOG
-echo "Installing fminer"
-rake fminer:install >> $INSTALLLOG 2>>$ERRLOG
-sudo apt-get install libsqlite3-dev >> $INSTALLLOG 2>>$ERRLOG
-
-
-mkdir ../opentox-model/db >> $INSTALLLOG 2>>$ERRLOG
-- 
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