From 611bac891177f8d9185d45486dd574b6ef4d1912 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Mon, 9 May 2016 15:11:46 +0200
Subject: nanoparticle models fixed

---
 data/enm-import.rb | 47 -----------------------------------------------
 1 file changed, 47 deletions(-)
 delete mode 100644 data/enm-import.rb

(limited to 'data/enm-import.rb')

diff --git a/data/enm-import.rb b/data/enm-import.rb
deleted file mode 100644
index 37bc22b..0000000
--- a/data/enm-import.rb
+++ /dev/null
@@ -1,47 +0,0 @@
-require_relative '../lib/lazar.rb'
-include OpenTox
-$mongo.database.drop
-$gridfs = $mongo.database.fs
-
-#get list of bundle URIs
-bundles = JSON.parse(RestClientWrapper.get('https://data.enanomapper.net/bundle?media=application%2Fjson'))["dataset"]
-bundles.each do |bundle|
-  uri = bundle["URI"]
-  nanoparticles = JSON.parse(RestClientWrapper.get(bundle["dataset"]+"?media=application%2Fjson"))["dataEntry"]
-  features = JSON.parse(RestClientWrapper.get(bundle["property"]+"?media=application%2Fjson"))["feature"]
-  nanoparticles.each do |np|
-      nanoparticle = Nanoparticle.find_or_create_by(
-        :name => np["values"]["https://data.enanomapper.net/identifier/name"],
-        :source => np["compound"]["URI"],
-      )
-      nanoparticle.bundles << uri
-      nanoparticle.bundles.uniq!
-      np["composition"].each do |comp|
-        case comp["relation"]
-        when "HAS_CORE"
-          nanoparticle.core = comp["component"]["compound"]["URI"]
-        when "HAS_COATING"
-          nanoparticle.coating << comp["component"]["compound"]["URI"]
-        end
-      end if np["composition"]
-      np["values"].each do |u,v|
-        if u.match(/property/)
-          name, unit, source = nil
-          features.each do |uri,feat|
-            if u.match(/#{uri}/)
-              name = feat["title"]
-              unit = feat["units"]
-              source = uri
-            end
-          end
-          feature = Feature.find_or_create_by(
-            :name => name,
-            :unit => unit,
-            :source => source
-          )
-        end
-        v.each{|value| nanoparticle.parse_ambit_value feature, value} if v.is_a? Array
-      end
-      nanoparticle.save!
-  end
-end
-- 
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