From f3780d7507092b643216054fa3ca1e6146281e43 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Fri, 8 Apr 2016 13:04:56 +0200
Subject: enm import test

---
 data/enm-import.rb | 25 +++++++++++--------------
 1 file changed, 11 insertions(+), 14 deletions(-)

(limited to 'data')

diff --git a/data/enm-import.rb b/data/enm-import.rb
index 65fd3c7..37bc22b 100644
--- a/data/enm-import.rb
+++ b/data/enm-import.rb
@@ -1,6 +1,7 @@
 require_relative '../lib/lazar.rb'
 include OpenTox
-
+$mongo.database.drop
+$gridfs = $mongo.database.fs
 
 #get list of bundle URIs
 bundles = JSON.parse(RestClientWrapper.get('https://data.enanomapper.net/bundle?media=application%2Fjson'))["dataset"]
@@ -13,38 +14,34 @@ bundles.each do |bundle|
         :name => np["values"]["https://data.enanomapper.net/identifier/name"],
         :source => np["compound"]["URI"],
       )
+      nanoparticle.bundles << uri
+      nanoparticle.bundles.uniq!
       np["composition"].each do |comp|
         case comp["relation"]
         when "HAS_CORE"
-          nanoparticle[:core] = comp["component"]["compound"]["URI"]
+          nanoparticle.core = comp["component"]["compound"]["URI"]
         when "HAS_COATING"
-          nanoparticle[:coating] ||= []
-          nanoparticle[:coating] << comp["component"]["compound"]["URI"]
+          nanoparticle.coating << comp["component"]["compound"]["URI"]
         end
       end if np["composition"]
       np["values"].each do |u,v|
         if u.match(/property/)
-          name, unit = nil
+          name, unit, source = nil
           features.each do |uri,feat|
             if u.match(/#{uri}/)
               name = feat["title"]
               unit = feat["units"]
+              source = uri
             end
           end
           feature = Feature.find_or_create_by(
             :name => name,
             :unit => unit,
-            #:source => uri
+            :source => source
           )
-          nanoparticle[:features] ||= {}
-          if v.size == 1 and v.first.keys == ["loValue"]
-            nanoparticle[:features][feature.id] = v.first["loValue"]
-          else
-            #TODO
-          end
         end
+        v.each{|value| nanoparticle.parse_ambit_value feature, value} if v.is_a? Array
       end
-      p nanoparticle
-      nanoparticle.save
+      nanoparticle.save!
   end
 end
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