From ae78e8216909ebfa708b8da3c55248a68abc291c Mon Sep 17 00:00:00 2001 From: "helma@in-silico.ch" Date: Wed, 14 Nov 2018 13:35:17 +0100 Subject: public model validation, updated documentation --- ext/lazar/extconf.rb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'ext/lazar/extconf.rb') diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb index 9997106..fd42828 100644 --- a/ext/lazar/extconf.rb +++ b/ext/lazar/extconf.rb @@ -5,7 +5,7 @@ require 'mkmf' main_dir = File.expand_path(File.join(File.dirname(__FILE__),"..","..")) # check for required programs -programs = ["R","Rscript","mongod","java","getconf"] +programs = ["R","Rscript","mongod","java","getconf","wget","unzip","xls2csv"] programs.each do |program| abort "Please install #{program} on your system." unless find_executable program end -- cgit v1.2.3 From 0882c2cd0de934d7377fc9d08c306be98612c88a Mon Sep 17 00:00:00 2001 From: "helma@in-silico.ch" Date: Fri, 16 Nov 2018 18:42:42 +0100 Subject: real datasets for testing, test data cleanup, Daphnia import, upper and lower similarity thresholds --- ext/lazar/extconf.rb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'ext/lazar/extconf.rb') diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb index fd42828..7cd85e0 100644 --- a/ext/lazar/extconf.rb +++ b/ext/lazar/extconf.rb @@ -5,7 +5,7 @@ require 'mkmf' main_dir = File.expand_path(File.join(File.dirname(__FILE__),"..","..")) # check for required programs -programs = ["R","Rscript","mongod","java","getconf","wget","unzip","xls2csv"] +programs = ["R","Rscript","mongod","java","getconf","wget","unzip","xls2csv","xlsx2csv"] programs.each do |program| abort "Please install #{program} on your system." unless find_executable program end -- cgit v1.2.3 From 455da06aa6459da0d25b286ca6cb866ff64c4c34 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 20 Jun 2019 22:01:50 +0200 Subject: separate csv serialisations for batch predictions and training data, repeated measurements in mutagenicity dataset fixed, daphnia import fixed, CENTRAL_MONGO_IP removed --- ext/lazar/extconf.rb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'ext/lazar/extconf.rb') diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb index 7cd85e0..aa031e5 100644 --- a/ext/lazar/extconf.rb +++ b/ext/lazar/extconf.rb @@ -10,7 +10,7 @@ programs.each do |program| abort "Please install #{program} on your system." unless find_executable program end -abort "Please install Rserve on your system. Execute 'install.packages('Rserve')' in a R console running as root ('sudo R')." unless `R CMD Rserve --version`.match(/^Rserve/) +abort "Please install the latest Rserve version on your system (the CRAN version is outdated). Execute 'install.packages('Rserve',,'http://www.rforge.net/')' in a R console running as root ('sudo R')." unless `R CMD Rserve --version`.match(/^Rserve v1.8/) # install R packages r_dir = File.join main_dir, "R" -- cgit v1.2.3