From 6117375fdc800fd071fc4983896c26700bf2acd7 Mon Sep 17 00:00:00 2001 From: gebele Date: Mon, 21 Mar 2016 09:50:12 +0000 Subject: added install script for R packages, updated README with install instructions; changed plot format from svg to png --- ext/lazar/rinstall.R | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 ext/lazar/rinstall.R (limited to 'ext/lazar/rinstall.R') diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R new file mode 100644 index 0000000..7c1510d --- /dev/null +++ b/ext/lazar/rinstall.R @@ -0,0 +1,7 @@ +chooseCRANmirror(ind=19); +install.packages("Rserve"); +install.packages("gridExtra"); +install.packages("ggplot2"); +install.packages("pls"); +install.packages("caret"); +install.packages("doMC"); -- cgit v1.2.3 From 90fbe8b3ef3fa05aa308e6650e11d690bb89b200 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 24 Mar 2016 13:43:27 +0100 Subject: local R package installation --- ext/lazar/rinstall.R | 16 +++++++++------- 1 file changed, 9 insertions(+), 7 deletions(-) (limited to 'ext/lazar/rinstall.R') diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R index 7c1510d..38e7377 100644 --- a/ext/lazar/rinstall.R +++ b/ext/lazar/rinstall.R @@ -1,7 +1,9 @@ -chooseCRANmirror(ind=19); -install.packages("Rserve"); -install.packages("gridExtra"); -install.packages("ggplot2"); -install.packages("pls"); -install.packages("caret"); -install.packages("doMC"); +libdir = commandArgs(trailingOnly=TRUE)[1] +# chooseCRANmirror(ind=19); does not have any impact on selected server +#args=paste0("--prefix=",libdir,"/..") +#install.packages("Rserve",lib=libdir,configure.args=args) +install.packages("gridExtra",lib=libdir); +install.packages("ggplot2",lib=libdir); +install.packages("pls",lib=libdir); +install.packages("caret",lib=libdir); +install.packages("doMC",lib=libdir); -- cgit v1.2.3 From 76d30230f589026d7019ddbfa8ae0a511e171e27 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 31 Mar 2016 10:04:42 +0200 Subject: lazar gem, version bumped to 0.9 --- ext/lazar/rinstall.R | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) (limited to 'ext/lazar/rinstall.R') diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R index 38e7377..4e4fac7 100644 --- a/ext/lazar/rinstall.R +++ b/ext/lazar/rinstall.R @@ -1,9 +1,8 @@ libdir = commandArgs(trailingOnly=TRUE)[1] -# chooseCRANmirror(ind=19); does not have any impact on selected server -#args=paste0("--prefix=",libdir,"/..") #install.packages("Rserve",lib=libdir,configure.args=args) -install.packages("gridExtra",lib=libdir); -install.packages("ggplot2",lib=libdir); -install.packages("pls",lib=libdir); -install.packages("caret",lib=libdir); -install.packages("doMC",lib=libdir); +repo = "https://stat.ethz.ch/CRAN/" +install.packages("gridExtra",lib=libdir,repos=repo); +install.packages("ggplot2",lib=libdir,repos=repo); +install.packages("pls",lib=libdir,repos=repo); +install.packages("caret",lib=libdir,repos=repo); +install.packages("doMC",lib=libdir,repos=repo); -- cgit v1.2.3 From 47afd445f964a830bcc1a1f35f159eb9d340f241 Mon Sep 17 00:00:00 2001 From: gebele Date: Mon, 4 Apr 2016 13:54:07 +0200 Subject: added rserve here --- ext/lazar/rinstall.R | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) (limited to 'ext/lazar/rinstall.R') diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R index 4e4fac7..73fd2c2 100644 --- a/ext/lazar/rinstall.R +++ b/ext/lazar/rinstall.R @@ -1,6 +1,8 @@ libdir = commandArgs(trailingOnly=TRUE)[1] -#install.packages("Rserve",lib=libdir,configure.args=args) repo = "https://stat.ethz.ch/CRAN/" +install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE) +install.packages("iterators",lib=libdir,repos=repo); +install.packages("foreach",lib=libdir,repos=repo); install.packages("gridExtra",lib=libdir,repos=repo); install.packages("ggplot2",lib=libdir,repos=repo); install.packages("pls",lib=libdir,repos=repo); -- cgit v1.2.3 From db8fcb1e29a44f052683102565bac557143f186a Mon Sep 17 00:00:00 2001 From: gebele Date: Mon, 4 Apr 2016 15:42:03 +0200 Subject: last commit doesnt work this way --- ext/lazar/rinstall.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'ext/lazar/rinstall.R') diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R index 73fd2c2..62595d3 100644 --- a/ext/lazar/rinstall.R +++ b/ext/lazar/rinstall.R @@ -1,6 +1,6 @@ libdir = commandArgs(trailingOnly=TRUE)[1] repo = "https://stat.ethz.ch/CRAN/" -install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE) +#install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE) install.packages("iterators",lib=libdir,repos=repo); install.packages("foreach",lib=libdir,repos=repo); install.packages("gridExtra",lib=libdir,repos=repo); -- cgit v1.2.3