From fbeb14b83a03a2ebff3ec2f0e52b57bb6954d454 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Fri, 25 Jun 2021 12:44:49 +0200
Subject: model validations and pa predictions added

---
 ext/lazar/Makefile   |  5 -----
 ext/lazar/extconf.rb | 32 --------------------------------
 ext/lazar/rinstall.R | 14 --------------
 3 files changed, 51 deletions(-)
 delete mode 100644 ext/lazar/Makefile
 delete mode 100644 ext/lazar/extconf.rb
 delete mode 100644 ext/lazar/rinstall.R

(limited to 'ext')

diff --git a/ext/lazar/Makefile b/ext/lazar/Makefile
deleted file mode 100644
index 1d51914..0000000
--- a/ext/lazar/Makefile
+++ /dev/null
@@ -1,5 +0,0 @@
-all:
-	true
-
-install:
-	true
diff --git a/ext/lazar/extconf.rb b/ext/lazar/extconf.rb
deleted file mode 100644
index aa031e5..0000000
--- a/ext/lazar/extconf.rb
+++ /dev/null
@@ -1,32 +0,0 @@
-require 'fileutils'
-require 'rbconfig'
-require 'mkmf'
-
-main_dir = File.expand_path(File.join(File.dirname(__FILE__),"..",".."))
-
-# check for required programs
-programs = ["R","Rscript","mongod","java","getconf","wget","unzip","xls2csv","xlsx2csv"]
-programs.each do |program|
-  abort "Please install #{program} on your system." unless find_executable program
-end
-
-abort "Please install the latest Rserve version on your system (the CRAN version is outdated). Execute 'install.packages('Rserve',,'http://www.rforge.net/')' in a R console running as root ('sudo R')."  unless `R CMD Rserve --version`.match(/^Rserve v1.8/)
-
-# install R packages
-r_dir = File.join main_dir, "R"
-FileUtils.mkdir_p r_dir
-#FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary
-rinstall = File.expand_path(File.join(File.dirname(__FILE__),"rinstall.R"))
-puts `Rscript --vanilla #{rinstall} #{r_dir}`
-
-r_libs = Dir[File.join(r_dir,"*")].collect{|l| l.sub(r_dir, '').sub('/','')}.sort
-["caret","doMC","foreach","ggplot2","gridExtra","iterators","pls"].each do |lib|
-  abort "Failed to install R package '#{lib}'." unless r_libs.include?(lib)
-end
-
-# create a fake Makefile
-File.open(File.join(File.dirname(__FILE__),"Makefile"),"w+") do |makefile|
-  makefile.puts "all:\n\ttrue\n\ninstall:\n\ttrue\n"
-end
-
-$makefile_created = true
diff --git a/ext/lazar/rinstall.R b/ext/lazar/rinstall.R
deleted file mode 100644
index 17c2e61..0000000
--- a/ext/lazar/rinstall.R
+++ /dev/null
@@ -1,14 +0,0 @@
-libdir = commandArgs(trailingOnly=TRUE)[1]
-repo = "https://stat.ethz.ch/CRAN/"
-#install.packages("Rserve",lib=libdir,repos=)
-# dependencies=TRUE installs unnecessary Suggests packages. The default, NA, means c("Depends", "Imports", "LinkingTo").
-install.packages("caret",lib=libdir,repos=repo);
-install.packages("stringi",lib=libdir,repos=repo);
-install.packages("iterators",lib=libdir,repos=repo);
-install.packages("labeling",lib=libdir,repos=repo);
-install.packages("foreach",lib=libdir,repos=repo);
-install.packages("gridExtra",lib=libdir,repos=repo);
-install.packages("ggplot2",lib=libdir,repos=repo);
-install.packages("pls",lib=libdir,repos=repo);
-install.packages("randomForest",lib=libdir,repos=repo);
-install.packages("doMC",lib=libdir,repos=repo);
-- 
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