From a165822a7bd663916cff9484a76e6bb6bcf9a353 Mon Sep 17 00:00:00 2001
From: mr <mr@mrautenberg.de>
Date: Mon, 25 Jan 2010 09:29:21 +0100
Subject: internal authorization with first user of users.yaml

---
 lib/algorithm.rb | 112 +++++++++++++++++++++++++++----------------------------
 1 file changed, 56 insertions(+), 56 deletions(-)

(limited to 'lib/algorithm.rb')

diff --git a/lib/algorithm.rb b/lib/algorithm.rb
index 6ae9e72..d5f85c7 100644
--- a/lib/algorithm.rb
+++ b/lib/algorithm.rb
@@ -1,66 +1,66 @@
 module OpenTox
-	module Algorithm 
+  module Algorithm 
 
-		class Fminer 
-			include Owl
+    class Fminer 
+      include Owl
 
-			def initialize
-				super
-				self.uri = File.join(@@config[:services]["opentox-algorithm"],'fminer')
-				self.title = "fminer"
-				self.source = "http://github.com/amaunz/libfminer"
-				self.parameters = {
-					"Dataset URI" => { :scope => "mandatory", :value => "dataset_uri" },
-					"Feature URI for dependent variable" => { :scope => "mandatory", :value => "feature_uri" }
-				}
-			end
+      def initialize
+        super
+        self.uri = File.join(@@config[:services]["opentox-algorithm"],'fminer')
+        self.title = "fminer"
+        self.source = "http://github.com/amaunz/libfminer"
+        self.parameters = {
+          "Dataset URI" => { :scope => "mandatory", :value => "dataset_uri" },
+          "Feature URI for dependent variable" => { :scope => "mandatory", :value => "feature_uri" }
+        }
+      end
 
-			def self.create_feature_dataset(params)
-			  resource = RestClient::Resource.new(params[:feature_generation_uri], :user => request.username, :password => request.password)
-			  resource.post :dataset_uri => params[:dataset_uri], :feature_uri => params[:feature_uri]
-			end
-		end
+      def self.create_feature_dataset(params)
+        resource = RestClient::Resource.new(params[:feature_generation_uri], :user => @@users[:users].keys[0], :password => @@users[:users].values[0])
+        resource.post :dataset_uri => params[:dataset_uri], :feature_uri => params[:feature_uri]
+      end
+    end
 
-		class Lazar 
-			include Owl
+    class Lazar 
+      include Owl
 
-			def initialize
-				super
-				self.uri = File.join(@@config[:services]["opentox-algorithm"],'lazar')
-				self.title = "lazar"
-				self.source = "http://github.com/helma/opentox-algorithm"
-				self.parameters = {
-					"Dataset URI" =>
-						{ :scope => "mandatory", :value => "dataset_uri" },
-					"Feature URI for dependent variable" =>
-						{ :scope => "mandatory", :value => "feature_uri" },
-					"Feature generation URI" =>
-						{ :scope => "mandatory", :value => "feature_generation_uri" }
-				}
-			end
-			
-			def self.create_model(params)
-			  resource = RestClient::Resource.new(File.join(@@config[:services]["opentox-algorithm"], "lazar"), :user => request.username, :password => request.password)
-				@uri = resource.post :dataset_uri => params[:dataset_uri], :feature_uri => params[:feature_uri], :feature_generation_uri => File.join(@@config[:services]["opentox-algorithm"], "fminer")
-			end
+      def initialize
+        super
+        self.uri = File.join(@@config[:services]["opentox-algorithm"],'lazar')
+        self.title = "lazar"
+        self.source = "http://github.com/helma/opentox-algorithm"
+        self.parameters = {
+          "Dataset URI" =>
+            { :scope => "mandatory", :value => "dataset_uri" },
+          "Feature URI for dependent variable" =>
+            { :scope => "mandatory", :value => "feature_uri" },
+          "Feature generation URI" =>
+            { :scope => "mandatory", :value => "feature_generation_uri" }
+        }
+      end
+      
+      def self.create_model(params)
+        resource = RestClient::Resource.new(File.join(@@config[:services]["opentox-algorithm"], "lazar"), :user => @@users[:users].keys[0], :password => @@users[:users].values[0])
+        @uri = resource.post :dataset_uri => params[:dataset_uri], :feature_uri => params[:feature_uri], :feature_generation_uri => File.join(@@config[:services]["opentox-algorithm"], "fminer")
+      end
 
-		end
+    end
 
-		class Similarity
-			def self.weighted_tanimoto(fp_a,fp_b,p)
-				common_features = fp_a & fp_b
-				all_features = fp_a + fp_b
-				common_p_sum = 0.0
-				if common_features.size > 0
-					common_features.each{|f| common_p_sum += p[f]}
-					all_p_sum = 0.0
-					all_features.each{|f| all_p_sum += p[f]}
-					common_p_sum/all_p_sum
-				else
-					0.0
-				end
-			end
-		end
+    class Similarity
+      def self.weighted_tanimoto(fp_a,fp_b,p)
+        common_features = fp_a & fp_b
+        all_features = fp_a + fp_b
+        common_p_sum = 0.0
+        if common_features.size > 0
+          common_features.each{|f| common_p_sum += p[f]}
+          all_p_sum = 0.0
+          all_features.each{|f| all_p_sum += p[f]}
+          common_p_sum/all_p_sum
+        else
+          0.0
+        end
+      end
+    end
 
-	end
+  end
 end
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