From 2d02fabfafccb164093062a962f392bb7d13647a Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Sat, 1 Aug 2015 18:03:09 +0200
Subject: 50 times faster bbrc setup by eliminating @fminer.add_fminer_data

---
 lib/dataset.rb | 13 ++++---------
 1 file changed, 4 insertions(+), 9 deletions(-)

(limited to 'lib/dataset.rb')

diff --git a/lib/dataset.rb b/lib/dataset.rb
index 38e195b..45f7119 100644
--- a/lib/dataset.rb
+++ b/lib/dataset.rb
@@ -5,6 +5,10 @@ module OpenTox
 
   class LazarPrediction < Dataset
     field :creator, type: String
+    def value compound
+    end
+    def confidence compound
+    end
   end
 
   class DescriptorDataset < Dataset
@@ -21,7 +25,6 @@ module OpenTox
   class Dataset
     include Mongoid::Document
 
-    attr_accessor :bulk
     attr_writer :data_entries
 
     # associations like has_many, belongs_to deteriorate performance
@@ -31,11 +34,6 @@ module OpenTox
     field :source, type: String
     field :warnings, type: Array, default: []
 
-    def initialize params=nil
-      super params
-      @bulk = []
-    end
-
     def save_all
       dump = Marshal.dump(@data_entries)
       file = Mongo::Grid::File.new(dump, :filename => "#{self.id.to_s}.data_entries")
@@ -344,10 +342,8 @@ module OpenTox
             next
           elsif numeric[j]
             @data_entries[i][j] = v.to_f
-            #dataset.bulk << [cid,feature_ids[j],v.to_f]
           else
             @data_entries[i][j] = v.strip
-            #dataset.bulk << [cid,feature_ids[j],v.strip]
           end
         end
       end
@@ -359,7 +355,6 @@ module OpenTox
       
       $logger.debug "Value parsing: #{Time.now-time} (Compound creation: #{compound_time})"
       time = Time.now
-      #dataset.bulk_write
       save_all
       $logger.debug "Saving: #{Time.now-time}"
 
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