From 8d2f1c8a0f6cc9f7a481d1117bf8b3351130b1ea Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Wed, 7 Oct 2015 12:34:02 +0200
Subject: generalised fingerprints

---
 lib/experiment.rb | 5 +++++
 1 file changed, 5 insertions(+)

(limited to 'lib/experiment.rb')

diff --git a/lib/experiment.rb b/lib/experiment.rb
index 6910139..0dfdf86 100644
--- a/lib/experiment.rb
+++ b/lib/experiment.rb
@@ -34,6 +34,7 @@ module OpenTox
         report[:results][dataset_name] = {}
         report[:results][dataset_name][:anova] = {}
         report[:results][dataset_name][:data] = []
+        # TODO results[dataset_id.to_s] does not exist
         results[dataset_id.to_s].each do |result|
           model = Model::Lazar.find(result[:model_id])
           repeated_cv = RepeatedCrossValidation.find(result[:repeated_crossvalidation_id])
@@ -67,6 +68,7 @@ module OpenTox
               outcome << p
             end
           end
+          begin
           R.assign "experiment_nr",experiments.collect{|i| "Experiment #{i}"}
           R.eval "experiment_nr = factor(experiment_nr)"
           R.assign "outcome", outcome
@@ -78,6 +80,9 @@ module OpenTox
           # aequivalent
           # sum = R.eval("summary(fit)")
           #p_value = sum.to_ruby.first.last.first
+          rescue 
+            p_value = nil
+          end
           report[:results][dataset][:anova][param] = p_value
 =begin
 =end
-- 
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