From 4067d78c78c1f503b5f21d043ece8042260a3d78 Mon Sep 17 00:00:00 2001
From: ch <ch@ch-test2>
Date: Tue, 18 Aug 2015 16:37:09 +0200
Subject: initial installation fixes, installs on Debian 3.16.7

---
 lib/lazar.rb | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

(limited to 'lib/lazar.rb')

diff --git a/lib/lazar.rb b/lib/lazar.rb
index 0c5e18b..9e2363c 100644
--- a/lib/lazar.rb
+++ b/lib/lazar.rb
@@ -14,7 +14,7 @@ require "base64"
 # TODO retrieve correct environment from Rack/Sinatra
 ENV["MONGOID_ENV"] ||= "development"
 # TODO remove config files, change default via ENV or directly in Mongoid class
-Mongoid.load!("#{ENV['HOME']}/.opentox/config/mongoid.yml")
+Mongoid.load!("#{File.expand_path(File.join(File.dirname(__FILE__),'..','mongoid.yml'))}")
 # TODO get Mongo::Client from Mongoid
 $mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox')
 # TODO same for GridFS
@@ -31,10 +31,13 @@ Mongo::Logger.level = Logger::WARN
 #Mongoid.logger = $logger
 
 # Require sub-Repositories
+# TODO: set 
+ENV["LD_LIBRARY_PATH"] = "#{File.join File.dirname(__FILE__),'..','openbabel','lib'}"
+p ENV["LD_LIBRARY_PATH"] 
 require_relative '../libfminer/libbbrc/bbrc' # include before openbabel
 require_relative '../libfminer/liblast/last' # 
 require_relative '../last-utils/lu.rb'
-require 'openbabel'
+require_relative '../openbabel/lib/openbabel'
 
 # Fminer environment variables
 ENV['FMINER_SMARTS'] = 'true'
-- 
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