From 455da06aa6459da0d25b286ca6cb866ff64c4c34 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 20 Jun 2019 22:01:50 +0200 Subject: separate csv serialisations for batch predictions and training data, repeated measurements in mutagenicity dataset fixed, daphnia import fixed, CENTRAL_MONGO_IP removed --- lib/lazar.rb | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) (limited to 'lib/lazar.rb') diff --git a/lib/lazar.rb b/lib/lazar.rb index 2a3f749..e77de9d 100644 --- a/lib/lazar.rb +++ b/lib/lazar.rb @@ -17,19 +17,22 @@ raise "Incorrect lazar environment variable LAZAR_ENV '#{ENV["LAZAR_ENV"]}', ple ENV["MONGOID_ENV"] = ENV["LAZAR_ENV"] ENV["RACK_ENV"] = ENV["LAZAR_ENV"] # should set sinatra environment +# CH: this interferes with /etc/hosts on my machine # search for a central mongo database in use # http://opentox.github.io/installation/2017/03/07/use-central-mongodb-in-docker-environment -CENTRAL_MONGO_IP = `grep -oP '^\\d{1,3}\\.\\d{1,3}\\.\\d{1,3}\\.\\d{1,3}(?=.*mongodb)' /etc/hosts`.chomp +# CENTRAL_MONGO_IP = `grep -oP '^\\d{1,3}\\.\\d{1,3}\\.\\d{1,3}\\.\\d{1,3}(?=.*mongodb)' /etc/hosts`.chomp Mongoid.load_configuration({ :clients => { :default => { :database => ENV["LAZAR_ENV"], - :hosts => (CENTRAL_MONGO_IP.blank? ? ["localhost:27017"] : ["#{CENTRAL_MONGO_IP}:27017"]), + #:hosts => (CENTRAL_MONGO_IP.blank? ? ["localhost:27017"] : ["#{CENTRAL_MONGO_IP}:27017"]), + :hosts => ["localhost:27017"] } } }) Mongoid.raise_not_found_error = false # return nil if no document is found -$mongo = Mongo::Client.new("mongodb://#{(CENTRAL_MONGO_IP.blank? ? "127.0.0.1" : CENTRAL_MONGO_IP)}:27017/#{ENV['LAZAR_ENV']}") +#$mongo = Mongo::Client.new("mongodb://#{(CENTRAL_MONGO_IP.blank? ? "127.0.0.1" : CENTRAL_MONGO_IP)}:27017/#{ENV['LAZAR_ENV']}") +$mongo = Mongo::Client.new("mongodb://127.0.0.1:27017/#{ENV['LAZAR_ENV']}") $gridfs = $mongo.database.fs # Logger setup -- cgit v1.2.3