From ab7b37541b4f8a762be737009631d3eefd898b4a Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 5 May 2016 16:14:02 +0200 Subject: ambit mirror, import from mirrored json, proteomics import --- lib/model.rb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'lib/model.rb') diff --git a/lib/model.rb b/lib/model.rb index 841ab20..12abc6e 100644 --- a/lib/model.rb +++ b/lib/model.rb @@ -47,9 +47,9 @@ module OpenTox end end R.assign "tox", toxicities - feature_ids = training_dataset.substances.collect{ |s| s["physchem_descriptors"].keys}.flatten.uniq + feature_ids = training_dataset.substances.collect{ |s| s["physchem"].keys}.flatten.uniq feature_ids.each do |feature_id| - feature_values = substances.collect{|s| s["physchem_descriptors"][feature_id]} + feature_values = substances.collect{|s| s["physchem"][feature_id]} R.assign "feature", feature_values begin #R.eval "cor <- cor.test(-log(tox),-log(feature),use='complete')" -- cgit v1.2.3