From 23ecfc6fa5ae4913e5cd17b7d58432d1f88d780c Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Mon, 10 Aug 2015 09:48:57 +0200
Subject: transfer to new git project started

---
 lib/opentox-client.rb | 52 ---------------------------------------------------
 1 file changed, 52 deletions(-)
 delete mode 100644 lib/opentox-client.rb

(limited to 'lib/opentox-client.rb')

diff --git a/lib/opentox-client.rb b/lib/opentox-client.rb
deleted file mode 100644
index e1e27c9..0000000
--- a/lib/opentox-client.rb
+++ /dev/null
@@ -1,52 +0,0 @@
-require 'rubygems'
-require "bundler/setup"
-require "rest-client"
-require 'yaml'
-require 'json'
-require 'logger'
-require 'mongoid'
-require 'rserve'
-
-# TODO store development/test, validation, production in separate databases
-ENV["MONGOID_ENV"] ||= "development"
-Mongoid.load!("#{ENV['HOME']}/.opentox/config/mongoid.yml")
-R = Rserve::Connection.new
-
-CLASSES = ["Feature","Compound",  "Dataset", "Validation", "CrossValidation"]#, "Task", "Investigation"]
-#CLASSES = ["Feature", "Dataset", "Validation", "Task", "Investigation"]
-
-# Regular expressions for parsing classification data
-#TRUE_REGEXP = /^(true|active|1|1.0|tox|activating|carcinogen|mutagenic)$/i
-#FALSE_REGEXP = /^(false|inactive|0|0.0|low tox|deactivating|non-carcinogen|non-mutagenic)$/i
-
-[
-  "overwrite.rb",
-  "rest-client-wrapper.rb", 
-  "error.rb",
-  #"authorization.rb", 
-  #"policy.rb", 
-  #"otlogger.rb", 
-  "opentox.rb",
-  #"task.rb",
-  "feature.rb",
-  "compound.rb",
-  #"data_entry.rb",
-  "dataset.rb",
-  #"algorithm.rb",
-  #"model.rb",
-  #"validation.rb"
-].each{ |f| require_relative f }
-
-#if defined?($aa) and $aa[:uri] 
-#  OpenTox::Authorization.authenticate($aa[:user],$aa[:password])
-#  unauthorized_error "Failed to authenticate user \"#{$aa[:user]}\"." unless OpenTox::Authorization.is_token_valid(OpenTox::RestClientWrapper.subjectid)
-#end
-
-# defaults to stderr, may be changed to file output (e.g in opentox-service)
-$logger = Logger.new STDOUT #OTLogger.new(STDOUT) # STDERR did not work on my development machine (CH)
-$logger.level = Logger::DEBUG
-#Mongo::Logger.logger = $logger
-Mongo::Logger.level = Logger::WARN 
-$mongo = Mongo::Client.new('mongodb://127.0.0.1:27017/opentox')
-$gridfs = $mongo.database.fs
-#Mongoid.logger = $logger
-- 
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