From 5bf99a0df4e24aef86681814951a9a8c08f5a1e6 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.de>
Date: Sat, 15 Aug 2009 13:45:32 +0200
Subject: authentification helper added, lazar object added

---
 lib/helper.rb                   | 26 ++++++++++++++++++++++++++
 lib/opentox-ruby-api-wrapper.rb | 22 ++++++++++++++++++----
 2 files changed, 44 insertions(+), 4 deletions(-)
 create mode 100644 lib/helper.rb

(limited to 'lib')

diff --git a/lib/helper.rb b/lib/helper.rb
new file mode 100644
index 0000000..a9f451e
--- /dev/null
+++ b/lib/helper.rb
@@ -0,0 +1,26 @@
+helpers do
+
+	# Authentification
+  def protected!
+    response['WWW-Authenticate'] = %(Basic realm="Testing HTTP Auth") and \
+    throw(:halt, [401, "Not authorized\n"]) and \
+    return unless authorized?
+  end
+
+  def authorized?
+    @auth ||=  Rack::Auth::Basic::Request.new(request.env)
+    @auth.provided? && @auth.basic? && @auth.credentials && @auth.credentials == ['api', API_KEY]
+  end
+
+	    
+=begin
+	def xml(object)
+		builder do |xml| 
+			xml.instruct!
+			object.to_xml
+		end
+	end
+=end
+
+end
+
diff --git a/lib/opentox-ruby-api-wrapper.rb b/lib/opentox-ruby-api-wrapper.rb
index 70a4580..8e4e28e 100644
--- a/lib/opentox-ruby-api-wrapper.rb
+++ b/lib/opentox-ruby-api-wrapper.rb
@@ -1,11 +1,12 @@
-require 'rest_client'
-require 'crack/xml'
-require 'spork'
+[ 'rest_client', 'crack/xml', 'spork', 'helper' ].each do |lib|
+	require lib
+end
 
 ENV['OPENTOX_COMPOUND'] = 'http://webservices.in-silico.ch/compound/v0/' unless ENV['OPENTOX_COMPOUND']
 ENV['OPENTOX_FEATURE']  = 'http://webservices.in-silico.ch/feature/v0/'  unless ENV['OPENTOX_FEATURE']
 ENV['OPENTOX_DATASET']  = 'http://webservices.in-silico.ch/dataset/v0/'  unless ENV['OPENTOX_DATASET']
 ENV['OPENTOX_FMINER']   = 'http://webservices.in-silico.ch/fminer/v0/'   unless ENV['OPENTOX_FMINER']
+ENV['OPENTOX_LAZAR']   = 'http://webservices.in-silico.ch/lazar/v0/'     unless ENV['OPENTOX_LAZAR']
 
 module OpenTox
 
@@ -86,7 +87,6 @@ module OpenTox
 				@uri = params[:uri].to_s
 			elsif params[:name] 
 				@uri = RestClient.post ENV['OPENTOX_DATASET'], :name => params[:name]
-				RestClient.delete @uri + '/associations'
 			end
 		end
 
@@ -140,4 +140,18 @@ module OpenTox
 
 	end
 
+	class Lazar < OpenTox
+
+		# Create a new prediction model from a dataset
+		def initialize(training_dataset)
+			@uri = RestClient.post ENV['OPENTOX_LAZAR'] + 'models/' , :dataset_uri => training_dataset.uri
+		end
+
+		# Predict a compound
+		def predict(compound)
+			RestClient.post @uri, :compound_uri => compound.uri
+		end
+
+	end
+
 end
-- 
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