From ca2bb0f90335b1f2c4ecc28ee423e85b281ffcf0 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Wed, 4 Nov 2015 17:50:17 +0100
Subject: neighbor search delegated to database backend

---
 test/compound.rb | 14 ++++++++++++--
 1 file changed, 12 insertions(+), 2 deletions(-)

(limited to 'test/compound.rb')

diff --git a/test/compound.rb b/test/compound.rb
index 22c152b..ff20c1c 100644
--- a/test/compound.rb
+++ b/test/compound.rb
@@ -162,7 +162,7 @@ print c.sdf
   end
 
   def test_fingerprint_db_neighbors
-    skip
+    #skip
     training_dataset = Dataset.from_csv_file File.join(DATA_DIR,"EPAFHM.csv")
     [
       "CC(=O)CC(C)C#N",
@@ -170,8 +170,18 @@ print c.sdf
       "C(=O)CC(C)C#N",
     ].each do |smi|
       c = OpenTox::Compound.from_smiles smi
+      t = Time.now
       neighbors = c.db_neighbors(:training_dataset_id => training_dataset.id, :min_sim => 0.2)
-      p neighbors
+      p Time.now - t
+      t = Time.now
+      neighbors2 = c.fingerprint_neighbors({:type => "MP2D", :training_dataset_id => training_dataset.id, :min_sim => 0.2})
+      p Time.now - t
+      p neighbors.size
+      p neighbors2.size
+      #p neighbors
+      #p neighbors2
+      #p neighbors2 - neighbors
+      #assert_equal neighbors, neighbors2
     end
   end
 end
-- 
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