From 4818850830a5b00e01ce5251d7a36f63f18b2b86 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Mon, 9 May 2016 16:20:33 +0200 Subject: enm test data added --- test/data/enm/bundles.json | 263 +++++ test/data/enm/enm-dump.rb | 17 + test/data/enm/enm-import.rb | 47 + ...-FCSV-0542c513-7015-3169-a1c1-e00f811a7ba0.json | 299 ++++++ ...-FCSV-0588dd9b-6227-307f-9e6a-6b07d4717e8c.json | 247 +++++ ...-FCSV-05f4c488-5326-3d8a-be41-c57c468b2fa4.json | 247 +++++ ...-FCSV-064f1803-3b9e-3f44-a5f6-60b1f573830c.json | 247 +++++ ...-FCSV-06c1d24b-426b-39ec-8047-700808302325.json | 247 +++++ ...-FCSV-07629748-9b8e-381b-a4e6-79b495404e02.json | 181 ++++ ...-FCSV-07ecc16e-528e-3904-bb96-0812dff8ea65.json | 233 +++++ ...-FCSV-0d5c0fc7-de56-3507-b651-1c91bf030465.json | 247 +++++ ...-FCSV-0e958d54-f957-37d2-91d1-ee8d9961548e.json | 181 ++++ ...-FCSV-0fe5f223-9c02-363c-a23c-70f1f36ffbec.json | 247 +++++ ...-FCSV-1180669a-fc30-3bc1-b53e-6a200c4248e4.json | 247 +++++ ...-FCSV-130b04ab-86e6-38d6-9276-e2db1b4dcffb.json | 247 +++++ ...-FCSV-1842b3a2-413c-327c-a07a-9905269bafb5.json | 247 +++++ ...-FCSV-1a71d2b3-8121-3790-a66b-774b12829bb3.json | 247 +++++ ...-FCSV-1c9a58a0-cd91-3636-8f7c-4fd886f8593a.json | 247 +++++ ...-FCSV-1f4a28c8-ecc6-342f-8cbf-1ed579dd34f4.json | 181 ++++ ...-FCSV-206b1a13-e02a-38a0-88ec-d5a8bfdabc55.json | 299 ++++++ ...-FCSV-2a853f39-424f-3a63-91f3-1300f85ebe73.json | 299 ++++++ ...-FCSV-2b9a077f-bef3-3ffd-a83a-77dd85db129a.json | 247 +++++ ...-FCSV-2de5071e-596b-3507-84fc-f9ba470cbcbf.json | 247 +++++ ...-FCSV-2ed7ebf8-d11d-3f39-8f05-b0132ec4d7e0.json | 299 ++++++ ...-FCSV-31bd6c7b-3247-3db9-93b6-59e0d3ecefa9.json | 181 ++++ ...-FCSV-3adf8c83-83b1-3ffa-8868-b8527d83923b.json | 247 +++++ ...-FCSV-3b96ad7a-bf2d-360d-881a-26094f498af6.json | 299 ++++++ ...-FCSV-3c5fb4b0-2e4e-3dae-9eb2-1dbfd202cd13.json | 247 +++++ ...-FCSV-4026a85b-f254-3d35-bd77-c634d38e4a22.json | 247 +++++ ...-FCSV-43f0ea59-aa2f-31d8-8d87-19c95ec9be18.json | 247 +++++ ...-FCSV-45779e93-a25d-39cc-9294-afc0b59f3cd6.json | 247 +++++ ...-FCSV-4683cde2-ec2e-3a2e-974a-3ba15cd79d05.json | 181 ++++ ...-FCSV-47e98c51-7508-362f-84d3-494bb124b849.json | 247 +++++ ...-FCSV-4c523ea9-f3e8-32f4-9152-f73400aedb67.json | 247 +++++ ...-FCSV-4dd1bf89-e885-3128-abe2-9a87fbbd0242.json | 299 ++++++ ...-FCSV-50aee86c-a3a2-3c46-86bf-5ac25485fc13.json | 299 ++++++ ...-FCSV-5b29295c-f2ab-3e5a-bb32-37caac38b002.json | 247 +++++ ...-FCSV-5c14595c-0e23-3f37-aaad-9988eba09196.json | 247 +++++ ...-FCSV-6046fc9f-3c73-3215-97e2-4ddcf85f41da.json | 181 ++++ ...-FCSV-62d68a47-f27e-3d76-a7cf-5cacae221ec7.json | 181 ++++ ...-FCSV-63da0f0e-51b8-3c56-b5d3-d4e0e9fb06a6.json | 247 +++++ ...-FCSV-6405ef25-683e-3763-a4e3-f56eb93174e4.json | 299 ++++++ ...-FCSV-6aea0743-7abb-3448-85ce-961b67fca97f.json | 247 +++++ ...-FCSV-6b15ab65-c2d3-3e58-ac04-18d8e1d45a7a.json | 247 +++++ ...-FCSV-6b272721-ed04-31bd-a4d4-cb6496140e85.json | 247 +++++ 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| 93 ++ ...-NWKI-c35f0f16-4616-3ec6-a142-4d274add68a2.json | 83 ++ ...-NWKI-c3d91296-7c2d-3971-b932-e671f2f83aa8.json | 36 + ...-NWKI-c3ff049e-e72a-35fe-9bbf-77f018259d63.json | 87 ++ ...-NWKI-c4c91023-5b41-3d6d-bb4f-ee1152926be0.json | 128 +++ ...-NWKI-c5b69d5d-7850-3ccb-9632-981dd8fb10e5.json | 26 + ...-NWKI-c5e226b0-d405-32d5-a652-7f7f1f0eb55d.json | 88 ++ ...-NWKI-c6c08b6e-cb44-3e91-9669-0979667f12b3.json | 83 ++ ...-NWKI-c7bee4e3-8884-3e29-ad8b-38decf6146fd.json | 203 ++++ ...-NWKI-c8d9772c-e50e-3c71-986c-e45692150d71.json | 206 ++++ ...-NWKI-c93a144a-cd6d-3fe0-ab86-13adb168ccb1.json | 87 ++ ...-NWKI-c9abfc3e-dc22-3b02-89dd-c46bb64b998f.json | 79 ++ ...-NWKI-ca37d03d-af78-3982-8ca0-76025e71fcf1.json | 94 ++ ...-NWKI-cad5bf58-cc90-33e5-88bb-bad4c9f9fe9e.json | 201 ++++ ...-NWKI-cb42fef6-1b74-3a92-9b29-3ea2418f38c2.json | 78 ++ ...-NWKI-cc55dabc-3794-3853-9cf1-1e0bcf31fb69.json | 148 +++ ...-NWKI-ccc62e19-8dfd-32a6-84fe-08e6ce7d12cc.json | 79 ++ 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254 +++++ ...-NWKI-d7e38d71-0fcb-3a23-8cbe-aae4ce82b33a.json | 36 + ...-NWKI-d8f70c6c-3496-3ad3-8ab3-e4f08a178d30.json | 118 +++ ...-NWKI-d9ca1fbc-29d5-31bf-9e86-0fefe94e53fe.json | 79 ++ ...-NWKI-db562080-5286-327a-b813-6775c437385e.json | 256 +++++ ...-NWKI-db9e79b1-e579-3732-9c27-51642b05f1ce.json | 79 ++ ...-NWKI-dce4f64f-efad-316b-931a-0b16b2e63941.json | 79 ++ ...-NWKI-dd085452-8fd2-3025-a64f-2784fdf17879.json | 85 ++ ...-NWKI-dd6b8324-524e-3281-8bf4-09044fbf01ab.json | 86 ++ ...-NWKI-de03994b-9d74-3e39-aa41-e7df34384442.json | 128 +++ ...-NWKI-de41f2a0-0251-3e59-901b-1157d810c835.json | 79 ++ ...-NWKI-df2f5618-fab4-3f50-a191-1eabaa999ff9.json | 84 ++ ...-NWKI-dfbd99e5-c150-3a5e-9147-59255d42bebb.json | 83 ++ ...-NWKI-e0386856-5e55-330a-9b5e-364c00de2f2b.json | 83 ++ ...-NWKI-e053e604-6adb-3b7b-86e8-4f7ee2fb1898.json | 79 ++ ...-NWKI-e078849d-6137-33fc-b103-d458cb77184a.json | 93 ++ ...-NWKI-e0ffe4e6-978c-367d-a011-bd700587c9fe.json | 86 ++ 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++ ...-NWKI-239abeb4-eb11-3e6e-8301-d486e21861aa.json | 62 ++ ...-NWKI-245fc9be-5928-354e-8fd1-ae88663923f1.json | 56 ++ ...-NWKI-2581f636-c16f-3680-9b3a-2bf0c8cab0b1.json | 62 ++ ...-NWKI-2944da02-ade8-38cc-b547-504f6afcf25a.json | 56 ++ ...-NWKI-2a046d54-ea47-31b2-a370-e886e5a0a6bb.json | 73 ++ ...-NWKI-2af8ed34-029d-3644-8327-23a596cfae0d.json | 54 ++ ...-NWKI-2bd4c991-b6fb-3eb3-8a0c-794607388b79.json | 56 ++ ...-NWKI-2e056907-7ac9-3b13-a599-ee10f2548d78.json | 57 ++ ...-NWKI-3068a619-f77c-3f33-848a-7b4248f6c52c.json | 62 ++ ...-NWKI-30a91305-4a0d-3d7b-a399-6d5b3ee0d641.json | 57 ++ ...-NWKI-33eda014-7b69-358a-93f0-e0ceef166a52.json | 62 ++ ...-NWKI-3424add5-867e-3dc5-864d-36c47589024b.json | 92 ++ ...-NWKI-3481f716-18fa-39b3-aa54-4acb67877194.json | 73 ++ ...-NWKI-34a6262c-7f25-3eea-9dd0-bf1e1df40ca9.json | 63 ++ ...-NWKI-369d200e-2bfc-392d-ae00-ceb41fabd459.json | 56 ++ ...-NWKI-37a99dad-2a53-3076-b21f-d078b89fb4fb.json | 63 ++ ...-NWKI-37e2b8ec-0e57-3ed8-9afc-93a3030ee25f.json | 61 ++ ...-NWKI-395bf212-b710-3385-9c23-715a7055b015.json | 61 ++ ...-NWKI-3a3b2bcd-8284-37dc-a619-56ffbd7ebd68.json | 60 ++ ...-NWKI-3b09fdd1-3024-3be3-b1c6-332b44f75f99.json | 59 ++ ...-NWKI-3bbccc84-019f-369f-ba70-490fcfde4423.json | 53 + ...-NWKI-3c8c8bb2-416f-3bff-862a-8433538cd4c5.json | 59 ++ ...-NWKI-3ccb7313-0905-322a-ac62-09adb667bc0f.json | 58 ++ ...-NWKI-3ccff23c-b3d6-3614-aef4-4324be42804b.json | 57 ++ ...-NWKI-3d8aaa66-97d9-351b-9771-691300d5e97c.json | 57 ++ ...-NWKI-3db8eb74-b206-31ad-8c1b-3569703c47cb.json | 58 ++ ...-NWKI-3e42f6e5-635a-3f1e-a51a-39ce26751ec9.json | 53 + ...-NWKI-3e6392b9-35fb-39ad-ad98-f6d6de37659a.json | 62 ++ ...-NWKI-3fb9be70-8c15-3b78-94e7-5c3c88799818.json | 56 ++ ...-NWKI-417f0133-8f2c-3255-bdcf-7d71ac295d00.json | 58 ++ ...-NWKI-41e63d70-d7c0-3bd2-9a65-e99dcdedb1a5.json | 62 ++ ...-NWKI-4358aa69-dec1-387a-b7ea-2238198ccdff.json | 59 ++ ...-NWKI-438d1468-d5d7-3977-9dab-15a3a05add38.json | 56 ++ ...-NWKI-44b3fa7b-1667-3f4a-9e31-7a5202320cf3.json | 62 ++ ...-NWKI-4551e0f7-e515-3cdb-a099-c2b99b04883d.json | 59 ++ ...-NWKI-458c2d5a-53f0-3c65-81eb-6fb5d128db59.json | 57 ++ ...-NWKI-45fc0568-39f3-33f2-bd68-f953733c0c96.json | 57 ++ ...-NWKI-473ed1d8-ae5a-3c80-b3f7-50dbc4fd9a3b.json | 57 ++ ...-NWKI-47d254de-8242-3374-9ed3-085227d473cc.json | 72 ++ ...-NWKI-4832de65-5a92-3849-8061-729a2d83017e.json | 56 ++ ...-NWKI-4b4cb369-8202-3483-9220-553e433c9159.json | 56 ++ ...-NWKI-4beee533-65e4-364a-adb7-7a520180de61.json | 92 ++ ...-NWKI-4dd2cfcb-0daf-33f7-ba67-f629e3019271.json | 58 ++ ...-NWKI-4e021275-ae4e-3d24-bdb8-40c6d8d9d6fc.json | 60 ++ ...-NWKI-4e62b022-02b9-35e7-a653-7ee317f54ae8.json | 58 ++ ...-NWKI-4f1a3729-4a88-31bc-abca-7eb6503a73d4.json | 58 ++ ...-NWKI-4f91db77-4cd0-3482-b989-571d2a9a4228.json | 93 ++ ...-NWKI-4fa19c49-f3b1-3e34-8aa4-3da258933bf8.json | 57 ++ ...-NWKI-506de59a-ae92-361b-a934-0fdfa41101c0.json | 60 ++ ...-NWKI-509caa0e-0b8c-30e9-9592-48c6a83fe4ec.json | 56 ++ ...-NWKI-5136670d-2925-31d0-8e12-811f8d67677f.json | 58 ++ ...-NWKI-5172b34a-a6f6-398f-ace6-1d30e6bc9efa.json | 92 ++ ...-NWKI-52e8adb0-6aba-3e7f-bc0c-85cb36c394a2.json | 59 ++ ...-NWKI-52edeff5-900d-3f5a-86ba-550e9b368239.json | 58 ++ ...-NWKI-535c1a8b-71d0-3388-aaf5-e3a5c86510cb.json | 62 ++ ...-NWKI-536c91ba-6cf8-3808-b611-f7d5830f5ed8.json | 56 ++ ...-NWKI-5454d5cb-1033-3d6f-a31e-038752525533.json | 58 ++ ...-NWKI-566286ef-03eb-317a-8d9d-24fffefefc0b.json | 93 ++ ...-NWKI-56d49cc3-4a76-354b-9a77-4b2ecb2dbef0.json | 58 ++ ...-NWKI-57943982-0642-388c-be22-f1770d3b620c.json | 58 ++ ...-NWKI-57a03b07-0bb6-306c-ba30-71d5bc626385.json | 59 ++ ...-NWKI-5a049bb7-380d-3c89-9c39-f1310ed7b09d.json | 57 ++ ...-NWKI-5a6518a3-ff8d-374b-a070-92a1addafdd7.json | 57 ++ ...-NWKI-5adec23a-ab6a-350e-baec-cd088a4667d5.json | 73 ++ ...-NWKI-5ae4ae3d-db28-3647-9a7a-0c2e3d8076aa.json | 60 ++ ...-NWKI-5e5ed57f-33d3-39bb-9511-3604a0babf5e.json | 57 ++ ...-NWKI-5eff14ab-be8b-3f57-96fc-7ed09e7546b5.json | 56 ++ 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++ ...-NWKI-6b8a44a2-b835-3f75-903c-cf0a71a247c9.json | 60 ++ ...-NWKI-6cab56b4-69d9-36e0-8c17-f467d08b2555.json | 56 ++ ...-NWKI-6cde234d-f073-3e1d-acd2-0ea10a01763f.json | 62 ++ ...-NWKI-6d5462cc-7e11-3919-b769-135f56fd2536.json | 61 ++ ...-NWKI-6e6a5fec-23c2-3fff-8522-a22689091196.json | 55 ++ ...-NWKI-6ede15ea-8037-379f-933e-7b947e155c6a.json | 59 ++ ...-NWKI-7031754f-5bb6-3594-8a32-0c03256cdf61.json | 62 ++ ...-NWKI-705f070c-0c34-3638-803b-c5e85749bf53.json | 57 ++ ...-NWKI-70e8dac6-42a3-36ed-8fa3-19ffbc3bb69f.json | 56 ++ ...-NWKI-71060af4-1613-35cf-95ee-2a039be0388a.json | 57 ++ ...-NWKI-7181cc57-548a-3117-b59a-bfff2933c0b5.json | 56 ++ ...-NWKI-72ead9c0-f7c1-36f4-98c4-92faa7e81863.json | 58 ++ ...-NWKI-743f46ab-ca20-3f60-a14f-1695430eae68.json | 56 ++ ...-NWKI-74c6a1ca-f415-3c86-9437-446299eb5e40.json | 62 ++ ...-NWKI-758c06ae-dc1f-3cbe-a409-91d14e5113d1.json | 72 ++ ...-NWKI-7680f6c2-68d8-3ee4-b84b-8107da3f6e19.json | 60 ++ ...-NWKI-77fb742b-c676-3ad7-bd19-6d5ec1df62ad.json | 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| 56 ++ ...-NWKI-83a75181-9103-3ef9-aec7-fa38074580f6.json | 61 ++ ...-NWKI-845bf8fc-788d-38f2-be58-030f27c0d337.json | 59 ++ ...-NWKI-85b50517-fdea-3aa6-abbd-dd506393aaa5.json | 58 ++ ...-NWKI-863267cf-faf0-349b-8046-6074d2e718b5.json | 56 ++ ...-NWKI-8667bfb7-a5da-3eb0-b9d7-86e2c8f06f19.json | 61 ++ ...-NWKI-86b21444-5403-3e29-b117-e09ef92cca2a.json | 60 ++ ...-NWKI-88767671-5631-3c93-8cfc-db0f48978e77.json | 53 + ...-NWKI-895a506b-c331-3576-bf9e-cbcde5822c11.json | 65 ++ ...-NWKI-8a4b3e23-3327-3421-b20a-2e71939b44b1.json | 56 ++ ...-NWKI-8a968835-50ab-33df-bf5e-42de32d01c15.json | 61 ++ ...-NWKI-8c5b9350-2c03-3173-9615-cabfbe6929c9.json | 58 ++ ...-NWKI-8ef21404-e101-37c8-8206-32f526d75012.json | 58 ++ ...-NWKI-8f43d9fb-94ae-3d2b-8bb6-e8eb060e3b1b.json | 56 ++ ...-NWKI-8f7f774c-d727-33a9-adc6-9068524faf1c.json | 56 ++ ...-NWKI-905e44ef-3f7f-314d-add0-3e00439eaded.json | 53 + ...-NWKI-90869553-c8fe-3ef6-8e68-47f392958127.json | 92 ++ ...-NWKI-9142c528-4a84-3566-b678-dc1eef7d22fe.json | 58 ++ ...-NWKI-916751bb-8457-3844-87c0-ada4c6afd1ab.json | 65 ++ ...-NWKI-92e20781-9c38-3c12-a311-14eab1e776fa.json | 62 ++ ...-NWKI-959963fd-df22-35fb-b821-dd3d74dd40ce.json | 56 ++ ...-NWKI-95bb8173-3aad-3441-a50e-97e62401eadb.json | 59 ++ ...-NWKI-97103918-5eeb-36a3-9981-3aa6dcef5d4c.json | 58 ++ ...-NWKI-97a6970a-0e83-3890-ae6e-5e83b99c0325.json | 56 ++ ...-NWKI-984a9c7f-2372-3b8f-9ff5-93a9f94f2eb7.json | 57 ++ ...-NWKI-994226ce-df01-3717-b45d-376f645a8d47.json | 53 + ...-NWKI-99ad0a8c-1c4b-3270-8a4b-7dab013e5fe8.json | 57 ++ ...-NWKI-99fe068d-e343-35f8-9cc9-06c3a3cf8e22.json | 57 ++ ...-NWKI-9a0a7a86-fd00-3835-9795-a4da7d9d1544.json | 92 ++ ...-NWKI-9a13f473-8a29-32e4-9653-ec03f5fb8923.json | 72 ++ ...-NWKI-9a41ca03-303d-3116-89fb-2335cc1bad2d.json | 56 ++ ...-NWKI-9f37da26-8619-3eb1-9c29-e5f9ea09de54.json | 58 ++ ...-NWKI-9f46a2dd-dda3-3c99-81c0-8d904172c345.json | 62 ++ ...-NWKI-9fb12a3a-3a26-3f95-82ed-371f58d92dfe.json | 58 ++ 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++ ...-NWKI-b14e37d1-8dbb-36d7-925c-4093c91a0e92.json | 58 ++ ...-NWKI-b19125a9-4499-3e0e-aa0c-7792401f4900.json | 56 ++ ...-NWKI-b4bd899e-c57e-3aaa-bf6f-54ec8ebd6ab5.json | 56 ++ ...-NWKI-b5385309-1812-33ad-a4cf-66d8d3a26bcc.json | 58 ++ ...-NWKI-b6c86895-1b73-39ec-8bd2-0106e77a7673.json | 56 ++ ...-NWKI-bb2f1a47-0260-3271-b9c3-edb850d15be9.json | 59 ++ ...-NWKI-bb304faf-e44e-3103-b2a6-01b99c1c23de.json | 59 ++ ...-NWKI-bb97285c-a58f-34c0-aa16-d5eac02280fa.json | 61 ++ ...-NWKI-bbb67d89-eaff-38ab-ba4f-403bfb064a0c.json | 72 ++ ...-NWKI-bbce341e-3e4d-37f9-a891-5462ada32180.json | 56 ++ ...-NWKI-bc434442-e632-3829-be8d-64df1c9b70d3.json | 56 ++ ...-NWKI-bec49753-e5ff-3f5d-96a4-69a07da2de45.json | 57 ++ ...-NWKI-c012600e-ca8e-31db-a7a8-d9f6a74e2464.json | 60 ++ ...-NWKI-c05becdf-4b9b-3599-9922-89235b2e10da.json | 60 ++ ...-NWKI-c075299c-c306-341a-8ccb-62c5bd123ab3.json | 57 ++ ...-NWKI-c0927a67-d21d-37e8-932d-fb1607e58aee.json | 61 ++ ...-NWKI-c10e9034-a37c-37f8-afa4-b0e1081c6856.json | 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'#{uri}/substance' -O 'study#{id}.json'` + #`wget --header='accept:application/json' '#{dataset["summary"]}' -O 'summary#{id}.json'` + #`wget --header='accept:application/json' '#{dataset["compound"]}' -O 'compound#{id}.json'` + #`wget --header='accept:application/json' '#{dataset["substance"]}' -O 'substance#{id}.json'` + #`wget --header='accept:application/json' '#{dataset["property"]}' -O 'property#{id}.json'` + #`wget --header='accept:application/json' '#{dataset["dataset"]}' -O 'dataset#{id}.json'` + #`wget --header='accept:application/json' '#{dataset["matrix"]}' -O 'matrix#{id}.json'` +end diff --git a/test/data/enm/enm-import.rb b/test/data/enm/enm-import.rb new file mode 100644 index 0000000..37bc22b --- /dev/null +++ b/test/data/enm/enm-import.rb @@ -0,0 +1,47 @@ +require_relative '../lib/lazar.rb' +include OpenTox +$mongo.database.drop +$gridfs = $mongo.database.fs + +#get list of bundle URIs +bundles = JSON.parse(RestClientWrapper.get('https://data.enanomapper.net/bundle?media=application%2Fjson'))["dataset"] +bundles.each do |bundle| + uri = bundle["URI"] + nanoparticles = JSON.parse(RestClientWrapper.get(bundle["dataset"]+"?media=application%2Fjson"))["dataEntry"] + features = JSON.parse(RestClientWrapper.get(bundle["property"]+"?media=application%2Fjson"))["feature"] + nanoparticles.each do |np| + nanoparticle = Nanoparticle.find_or_create_by( + :name => np["values"]["https://data.enanomapper.net/identifier/name"], + :source => np["compound"]["URI"], + ) + nanoparticle.bundles << uri + nanoparticle.bundles.uniq! + np["composition"].each do |comp| + case comp["relation"] + when "HAS_CORE" + nanoparticle.core = comp["component"]["compound"]["URI"] + when "HAS_COATING" + nanoparticle.coating << comp["component"]["compound"]["URI"] + end + end if np["composition"] + np["values"].each do |u,v| + if u.match(/property/) + name, unit, source = nil + features.each do |uri,feat| + if u.match(/#{uri}/) + name = feat["title"] + unit = feat["units"] + source = uri + end + end + feature = Feature.find_or_create_by( + :name => name, + :unit => unit, + :source => source + ) + end + v.each{|value| nanoparticle.parse_ambit_value feature, value} if v.is_a? Array + end + nanoparticle.save! + end +end diff --git a/test/data/enm/nanoparticle-FCSV-0542c513-7015-3169-a1c1-e00f811a7ba0.json b/test/data/enm/nanoparticle-FCSV-0542c513-7015-3169-a1c1-e00f811a7ba0.json new file mode 100644 index 0000000..ef2cb79 --- /dev/null +++ b/test/data/enm/nanoparticle-FCSV-0542c513-7015-3169-a1c1-e00f811a7ba0.json @@ -0,0 +1,299 @@ +{ + "compound": { + "URI": "https://data.enanomapper.net/substance/FCSV-0542c513-7015-3169-a1c1-e00f811a7ba0", + "structype": "NA", + "metric": null, + "name": "", + "cas": "", + "einecs": "" + }, + "values": { + "https://data.enanomapper.net/identifier/name": "G30.NT@F127", + "https://data.enanomapper.net/identifier/tradename": "G30.NT@F127", + "https://data.enanomapper.net/identifier/uuid": "FCSV-0542c513-7015-3169-a1c1-e00f811a7ba0", + "https://data.enanomapper.net/owner/name": "Protein Corona Fingerprinting Predicts the Cellular Interaction of Gold and Silver Nanoparticles.csv", + 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chemical properties (other)" + }, + "endpoint": "Ellman depletion assay", + "guideline": [ + "doi: 10.1021/nn406018q" + ] + }, + "parameters": { + "Type of method": "Serum.density", + "testmat_form": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "Autot (ICP-AES)", + "conditions": { + "MEDIUM": "Human serum (Sigma #H4522)" + }, + "result": { + "unit": "nmol", + "loQualifier": "mean", + "loValue": 256.669, + "errQualifier": "sd", + "errorValue": 8.92 + } + }, + { + "endpoint": "Total surface area (SAtot)", + "conditions": { + "MEDIUM": "Human serum (Sigma #H4522)" + }, + "result": { + "unit": "cm^2", + "loQualifier": "mean", + "loValue": 11, + "errQualifier": "sd", + "errorValue": 0.0 + } + }, + { + "endpoint": "Protein density", + 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chemical properties (other)" + }, + "endpoint": "Ellman depletion assay", + "guideline": [ + "doi: 10.1021/nn406018q" + ] + }, + "parameters": { + "Type of method": "Serum.density", + "testmat_form": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "Autot (ICP-AES)", + "conditions": { + "MEDIUM": "Human serum (Sigma #H4522)" + }, + "result": { + "unit": "nmol", + "loQualifier": "mean", + "loValue": 263.69, + "errQualifier": "sd", + "errorValue": 33.967 + } + }, + { + "endpoint": "Total surface area (SAtot)", + "conditions": { + "MEDIUM": "Human serum (Sigma #H4522)" + }, + "result": { + "unit": "cm^2", + "loQualifier": "mean", + "loValue": 11, + "errQualifier": "sd", + "errorValue": 1 + } + }, + { + "endpoint": "Protein density", + 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+ }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 16.6, + "errorValue": 4.3 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-17c74ed1-b289-3ca1-8477-390a588cb28c.json b/test/data/enm/study-NWKI-17c74ed1-b289-3ca1-8477-390a588cb28c.json new file mode 100644 index 0000000..371d87d --- /dev/null +++ b/test/data/enm/study-NWKI-17c74ed1-b289-3ca1-8477-390a588cb28c.json @@ -0,0 +1,92 @@ +{ + "uuid": "NWKI-fc98e120-6aeb-496f-ae14-dafbad45794a", + "owner": { + "substance": { + "uuid": "NWKI-17c74ed1-b289-3ca1-8477-390a588cb28c" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "SURFACE_CHEMISTRY_SECTION", + "term": "http://purl.obolibrary.org/obo/BAO_0000015", + "title": "4.30 Nanomaterial surface chemistry" + }, + "endpoint": "Unknown", + "guideline": [ + "" + ] + }, + "parameters": { + "DATA_GATHERING_INSTRUMENTS": null, + "Method details": null, + "SAMPLING": null, + "Type of method": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "ATOMIC COMPOSITION", + "conditions": { + "COATING_DESCRIPTION": null, + "DESCRIPTION": null, + "ELEMENT_OR_GROUP": { + "loQualifier": " ", + "loValue": "Fe2O3" + }, + "Remark": null, + "TYPE": { + "loQualifier": " ", + "loValue": "CORE" + } + }, + "result": { + "unit": null, + "textValue": "Fe2O3" + } + }, + { + "endpoint": "ATOMIC COMPOSITION", + "conditions": { + "COATING_DESCRIPTION": { + "loQualifier": " ", + "loValue": "PVA-2DPEG" + }, + "DESCRIPTION": { + "loQualifier": " ", + "loValue": "PEG" + }, + "ELEMENT_OR_GROUP": { + "loQualifier": " " + }, + "Remark": null, + "TYPE": { + "loQualifier": " ", + "loValue": "COATING" + } + }, + "result": { + "unit": null, + "textValue": "PEG" + } + } + ] +} diff --git a/test/data/enm/study-NWKI-18aebb90-aacb-3e15-b516-4d3683e9c27b.json b/test/data/enm/study-NWKI-18aebb90-aacb-3e15-b516-4d3683e9c27b.json new file mode 100644 index 0000000..963ad90 --- /dev/null +++ b/test/data/enm/study-NWKI-18aebb90-aacb-3e15-b516-4d3683e9c27b.json @@ -0,0 +1,59 @@ +{ + "uuid": "NWKI-cddd50dd-d01f-41e3-8223-bf8bb3f790d9", + "owner": { + "substance": { + "uuid": "NWKI-18aebb90-aacb-3e15-b516-4d3683e9c27b" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.3109/17435390903276933", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loQualifier": ">=", + "loValue": 40, + "upQualifier": "<=", + "upValue": 300 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-19b5dfef-0d95-3878-9075-2897e8631277.json b/test/data/enm/study-NWKI-19b5dfef-0d95-3878-9075-2897e8631277.json new file mode 100644 index 0000000..27e8ac7 --- /dev/null +++ b/test/data/enm/study-NWKI-19b5dfef-0d95-3878-9075-2897e8631277.json @@ -0,0 +1,58 @@ +{ + "uuid": "NWKI-b82cf2e9-5da7-4c35-8014-ecb154a3639b", + "owner": { + "substance": { + "uuid": "NWKI-19b5dfef-0d95-3878-9075-2897e8631277" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.3390/ijerph110908867", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": 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a/test/data/enm/study-NWKI-3e42f6e5-635a-3f1e-a51a-39ce26751ec9.json b/test/data/enm/study-NWKI-3e42f6e5-635a-3f1e-a51a-39ce26751ec9.json new file mode 100644 index 0000000..51cb2c0 --- /dev/null +++ b/test/data/enm/study-NWKI-3e42f6e5-635a-3f1e-a51a-39ce26751ec9.json @@ -0,0 +1,53 @@ +{ + "uuid": "NWKI-ff65f97b-b115-4b5e-982e-66757a1be5ef", + "owner": { + "substance": { + "uuid": "NWKI-3e42f6e5-635a-3f1e-a51a-39ce26751ec9" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1038/nnano.2011.10", + "year": "2011", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "TOX", + "category": { + "code": "BAO_0003009_SECTION", + "term": "http://purl.obolibrary.org/obo/BAO_0003009", + "title": "BAO_0003009 Cell Viability Assay" + }, + "endpoint": "Log Reciprocal EC50", + "guideline": [ + "" + ] + }, + "parameters": { + "Cell line": "Escherichia coli cells" + }, + "reliability": { + 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index 0000000..c527736 --- /dev/null +++ b/test/data/enm/study-NWKI-3fb9be70-8c15-3b78-94e7-5c3c88799818.json @@ -0,0 +1,56 @@ +{ + "uuid": "NWKI-f96d66db-233b-4b6f-906f-302f75470d03", + "owner": { + "substance": { + "uuid": "NWKI-3fb9be70-8c15-3b78-94e7-5c3c88799818" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1073/pnas.0802878105", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 20 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-417f0133-8f2c-3255-bdcf-7d71ac295d00.json b/test/data/enm/study-NWKI-417f0133-8f2c-3255-bdcf-7d71ac295d00.json new file mode 100644 index 0000000..4ee19d0 --- /dev/null +++ b/test/data/enm/study-NWKI-417f0133-8f2c-3255-bdcf-7d71ac295d00.json @@ -0,0 +1,58 @@ +{ + "uuid": "NWKI-f5e2ff69-a30f-4e11-b174-919b40b307a3", + "owner": { + "substance": { + "uuid": "NWKI-417f0133-8f2c-3255-bdcf-7d71ac295d00" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1002/smll.201002366", + "year": "2011", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "TOX", + "category": { + "code": "BAO_0003009_SECTION", + "term": "http://purl.obolibrary.org/obo/BAO_0003009", + "title": "BAO_0003009 Cell Viability Assay" + }, + "endpoint": "Toxicity Classifier", + "guideline": [ + "PI uptake assay" + ] + }, + "parameters": { + "Cell line": "BEAS-2B", + "Method type": "PI uptake assay" + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": "Toxic" + }, + "effects": [ + { + "endpoint": "Toxicity Classifier", + "conditions": { + "Doses/concentrations": { + "loValue": 100, + "unit": "mg/L" + } + }, + "result": { + "unit": null, + "textValue": "Toxic" + } + } + ] +} diff --git a/test/data/enm/study-NWKI-41e63d70-d7c0-3bd2-9a65-e99dcdedb1a5.json b/test/data/enm/study-NWKI-41e63d70-d7c0-3bd2-9a65-e99dcdedb1a5.json new file mode 100644 index 0000000..e72a4ec --- /dev/null +++ b/test/data/enm/study-NWKI-41e63d70-d7c0-3bd2-9a65-e99dcdedb1a5.json @@ -0,0 +1,62 @@ +{ + "uuid": "NWKI-cb6f500d-8d1c-4196-94b8-1a8b9bcd30f6", + "owner": { + "substance": { + "uuid": "NWKI-41e63d70-d7c0-3bd2-9a65-e99dcdedb1a5" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nl0730155", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ZETA_POTENTIAL_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1302", + "title": "4.29 Nanomaterial zeta potential" + }, + "endpoint": "Zeta Potential", + "guideline": [ + "" + ] + }, + "parameters": { + "DATA_GATHERING_INSTRUMENTS": null, + "Method details": null, + "SAMPLING": null, + "TESTMAT_FORM": null, + "Type of method": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + 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+ "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 8 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-44b3fa7b-1667-3f4a-9e31-7a5202320cf3.json b/test/data/enm/study-NWKI-44b3fa7b-1667-3f4a-9e31-7a5202320cf3.json new file mode 100644 index 0000000..7a6c478 --- /dev/null +++ b/test/data/enm/study-NWKI-44b3fa7b-1667-3f4a-9e31-7a5202320cf3.json @@ -0,0 +1,62 @@ +{ + "uuid": "NWKI-e45646a0-dfc1-45c9-84b2-d7ce19efcc2f", + "owner": { + "substance": { + "uuid": "NWKI-44b3fa7b-1667-3f4a-9e31-7a5202320cf3" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nl0730155", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ZETA_POTENTIAL_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1302", + "title": "4.29 Nanomaterial zeta potential" + }, + "endpoint": "Zeta Potential", + "guideline": [ + "" + 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--git a/test/data/enm/study-NWKI-5f88a526-3e3f-3da5-8082-8d1da0cdfefa.json b/test/data/enm/study-NWKI-5f88a526-3e3f-3da5-8082-8d1da0cdfefa.json new file mode 100644 index 0000000..cbc8c02 --- /dev/null +++ b/test/data/enm/study-NWKI-5f88a526-3e3f-3da5-8082-8d1da0cdfefa.json @@ -0,0 +1,56 @@ +{ + "uuid": "NWKI-c8207d31-f8f9-48db-ba39-15668b625d56", + "owner": { + "substance": { + "uuid": "NWKI-5f88a526-3e3f-3da5-8082-8d1da0cdfefa" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": null, + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 42 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-605f4f43-028b-3a42-ae94-9852a9f6f5f8.json b/test/data/enm/study-NWKI-605f4f43-028b-3a42-ae94-9852a9f6f5f8.json new file mode 100644 index 0000000..ace4bbb --- /dev/null +++ b/test/data/enm/study-NWKI-605f4f43-028b-3a42-ae94-9852a9f6f5f8.json @@ -0,0 +1,63 @@ +{ + "uuid": "NWKI-e9ae71d3-fd50-4f4e-bef9-9063b1f1297d", + "owner": { + "substance": { + "uuid": "NWKI-605f4f43-028b-3a42-ae94-9852a9f6f5f8" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nn301622h", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ZETA_POTENTIAL_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1302", + "title": "4.29 Nanomaterial zeta potential" + }, + "endpoint": "Zeta Potential", + "guideline": [ + "" + ] + }, + "parameters": { + "DATA_GATHERING_INSTRUMENTS": null, + "Method details": null, + "SAMPLING": null, + "TESTMAT_FORM": null, + "Type of method": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "ZETA POTENTIAL", + "conditions": { + "MEDIUM": null, + "Remark": null, + "pH": { + "loValue": 7 + } + }, + "result": { + "unit": "mV", + "loValue": -48, + "errorValue": 2 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-61515bd0-5a80-3428-a093-01be1d677862.json b/test/data/enm/study-NWKI-61515bd0-5a80-3428-a093-01be1d677862.json new file mode 100644 index 0000000..e27010b --- /dev/null +++ b/test/data/enm/study-NWKI-61515bd0-5a80-3428-a093-01be1d677862.json @@ -0,0 +1,58 @@ +{ + "uuid": "NWKI-ec8a860b-5c0c-4f89-a591-eacdf9757dcd", + "owner": { + "substance": { + "uuid": "NWKI-61515bd0-5a80-3428-a093-01be1d677862" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": null, + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Hydrodynamic size", + "guideline": [ + "DLS" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "Method type": "DLS", + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "MASS MEDIAN AERODYNAMIC DIAMETER", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 112, + "errorValue": 10 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-61c73e33-28ab-3387-8cdf-cb7c135fb06c.json b/test/data/enm/study-NWKI-61c73e33-28ab-3387-8cdf-cb7c135fb06c.json new file mode 100644 index 0000000..bfff265 --- /dev/null +++ b/test/data/enm/study-NWKI-61c73e33-28ab-3387-8cdf-cb7c135fb06c.json @@ -0,0 +1,57 @@ +{ + "uuid": "NWKI-3c8f8896-6dea-4451-a11f-3c965363955c", + "owner": { + "substance": { + "uuid": "NWKI-61c73e33-28ab-3387-8cdf-cb7c135fb06c" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nn3010087", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 18.3, + "errorValue": 6.8 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-6392b929-1b64-34ce-90c6-162b99ce3992.json b/test/data/enm/study-NWKI-6392b929-1b64-34ce-90c6-162b99ce3992.json new file mode 100644 index 0000000..b0a68cf --- /dev/null +++ b/test/data/enm/study-NWKI-6392b929-1b64-34ce-90c6-162b99ce3992.json @@ -0,0 +1,57 @@ +{ + "uuid": "NWKI-494d44b2-073a-4136-b394-0efd79375df2", + "owner": { + "substance": { + "uuid": "NWKI-6392b929-1b64-34ce-90c6-162b99ce3992" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nn3010087", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 14.7, + "errorValue": 5.2 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-666817c2-87cb-3826-92f8-e79a7b37957d.json b/test/data/enm/study-NWKI-666817c2-87cb-3826-92f8-e79a7b37957d.json new file mode 100644 index 0000000..2d49af7 --- /dev/null +++ b/test/data/enm/study-NWKI-666817c2-87cb-3826-92f8-e79a7b37957d.json @@ -0,0 +1,58 @@ +{ + "uuid": "NWKI-d17c12f1-7406-4114-82b4-2e1bc70fb96f", + "owner": { + "substance": { + "uuid": "NWKI-666817c2-87cb-3826-92f8-e79a7b37957d" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": null, + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "SPECIFIC_SURFACE_AREA_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1235", + "title": "4.28 Nanomaterial specific surface area" + }, + "endpoint": "Specific Surface Area", + "guideline": [ + "" + ] + }, + "parameters": { + "DATA_GATHERING_INSTRUMENTS": null, + "Method details": null, + "SAMPLING": null, + "TESTMAT_FORM": null, + "Type of method": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "SPECIFIC_SURFACE_AREA", + "conditions": { + "Remark": null + }, + "result": { + "unit": "m^2/g", + "loValue": 60 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-674cfd7c-bc77-36c7-bbe0-d52dd0233d64.json b/test/data/enm/study-NWKI-674cfd7c-bc77-36c7-bbe0-d52dd0233d64.json new file mode 100644 index 0000000..ea9641e --- /dev/null +++ b/test/data/enm/study-NWKI-674cfd7c-bc77-36c7-bbe0-d52dd0233d64.json @@ -0,0 +1,57 @@ +{ + "uuid": "NWKI-7daf91aa-55cd-4134-823f-507d470782dd", + "owner": { + "substance": { + "uuid": "NWKI-674cfd7c-bc77-36c7-bbe0-d52dd0233d64" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1080/10934520600966177", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ASPECT_RATIO_SHAPE_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_274", + "title": "4.27 Nanomaterial aspect ratio/shape" + }, + "endpoint": "Shape", + "guideline": [ + "" + ] + }, + "parameters": { + "DATA_GATHERING_INSTRUMENTS": null, + "Method details": null, + "SAMPLING": null, + "Type of method": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": "Primarily gamma phase" + }, + "effects": [ + { + "endpoint": "SHAPE", + "conditions": { + "Remark": null + }, + "result": { + "unit": null, + "textValue": "Primarily gamma phase" + } + } + ] +} diff --git a/test/data/enm/study-NWKI-67b71fb2-85c1-3130-bd4e-84da8bc05fc9.json b/test/data/enm/study-NWKI-67b71fb2-85c1-3130-bd4e-84da8bc05fc9.json new file mode 100644 index 0000000..6d2e6ca --- /dev/null +++ b/test/data/enm/study-NWKI-67b71fb2-85c1-3130-bd4e-84da8bc05fc9.json @@ -0,0 +1,55 @@ +{ + "uuid": "NWKI-d5e6f259-f334-47d7-882b-339469b2d6c7", + "owner": { + "substance": { + "uuid": "NWKI-67b71fb2-85c1-3130-bd4e-84da8bc05fc9" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": null, + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_MELTING_SECTION", + "term": "http://semanticscience.org/resource/CHEMINF_000256", + "title": "4.2 Melting point / freezing point" + }, + "endpoint": "Melting Point", + "guideline": [ + "" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "Melting Point", + "conditions": { + "Decomposition": null, + "Sublimation": null + }, + "result": { + "unit": "°C", + "loQualifier": ">=", + "loValue": 1600 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-6821e372-3b17-3a56-8fac-f66115f24e5d.json b/test/data/enm/study-NWKI-6821e372-3b17-3a56-8fac-f66115f24e5d.json new file mode 100644 index 0000000..c8d8cb8 --- /dev/null +++ b/test/data/enm/study-NWKI-6821e372-3b17-3a56-8fac-f66115f24e5d.json @@ -0,0 +1,56 @@ +{ + "uuid": "NWKI-afaf9d66-7295-4597-b804-b1b6ff16380e", + "owner": { + "substance": { + "uuid": "NWKI-6821e372-3b17-3a56-8fac-f66115f24e5d" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": null, + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Mean Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 47 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-694f4202-c0ba-3ed9-a0f3-0a5ccba9e9c1.json b/test/data/enm/study-NWKI-694f4202-c0ba-3ed9-a0f3-0a5ccba9e9c1.json new file mode 100644 index 0000000..23feed6 --- /dev/null +++ b/test/data/enm/study-NWKI-694f4202-c0ba-3ed9-a0f3-0a5ccba9e9c1.json @@ -0,0 +1,56 @@ +{ + "uuid": "NWKI-875567d3-6661-4f7e-82ff-e95d8dcea8bf", + "owner": { + "substance": { + "uuid": "NWKI-694f4202-c0ba-3ed9-a0f3-0a5ccba9e9c1" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": null, + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Mean Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 137 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-696f7b05-2dea-3a14-b080-fef134f4eff5.json b/test/data/enm/study-NWKI-696f7b05-2dea-3a14-b080-fef134f4eff5.json new file mode 100644 index 0000000..c9f20ec --- /dev/null +++ b/test/data/enm/study-NWKI-696f7b05-2dea-3a14-b080-fef134f4eff5.json @@ -0,0 +1,57 @@ +{ + "uuid": "NWKI-566d754e-ac76-4e29-a17e-6e7e815ba719", + "owner": { + "substance": { + "uuid": "NWKI-696f7b05-2dea-3a14-b080-fef134f4eff5" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nn3010087", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": 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"substance": { + "uuid": "NWKI-c05becdf-4b9b-3599-9922-89235b2e10da" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1073/pnas.0802878105", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ZETA_POTENTIAL_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1302", + "title": "4.29 Nanomaterial zeta potential" + }, + "endpoint": "Zeta Potential", + "guideline": [ + "" + ] + }, + "parameters": { + "DATA_GATHERING_INSTRUMENTS": null, + "Method details": null, + "SAMPLING": null, + "TESTMAT_FORM": null, + "Type of method": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "ZETA POTENTIAL", + "conditions": { + "MEDIUM": null, + "Remark": null, + "pH": null + }, + "result": { + "unit": null, + "loValue": -37 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-c075299c-c306-341a-8ccb-62c5bd123ab3.json b/test/data/enm/study-NWKI-c075299c-c306-341a-8ccb-62c5bd123ab3.json new file mode 100644 index 0000000..35501c2 --- /dev/null +++ b/test/data/enm/study-NWKI-c075299c-c306-341a-8ccb-62c5bd123ab3.json @@ -0,0 +1,57 @@ +{ + "uuid": "NWKI-1b01ed49-5212-4774-b777-9ff22f324e2f", + "owner": { + "substance": { + "uuid": "NWKI-c075299c-c306-341a-8ccb-62c5bd123ab3" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nn3010087", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 140.6, + "errorValue": 52.5 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-c0927a67-d21d-37e8-932d-fb1607e58aee.json b/test/data/enm/study-NWKI-c0927a67-d21d-37e8-932d-fb1607e58aee.json new file mode 100644 index 0000000..419d383 --- /dev/null +++ b/test/data/enm/study-NWKI-c0927a67-d21d-37e8-932d-fb1607e58aee.json @@ -0,0 +1,61 @@ +{ + "uuid": "NWKI-f7d03856-5343-4baa-ad7a-c1c3722a2e5a", + "owner": { + "substance": { + "uuid": "NWKI-c0927a67-d21d-37e8-932d-fb1607e58aee" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.3109/17435390903276933", + "year": "2009", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "TOX", + "category": { + "code": "BAO_0002167_SECTION", + "term": "http://purl.obolibrary.org/obo/BAO_0002167", + "title": "BAO_0002167 Genotoxicity Assay" + }, + "endpoint": "DNA in Tail", + "guideline": [ + "Fpg-2Dmodified Comet Assay" + ] + }, + "parameters": { + "Cell line": "Caco-2 cell", + "Method type": "Fpg-2Dmodified Comet Assay" + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "DNA_in_Tail", + "conditions": { + "Doses/concentrations": { + "loValue": 20, + "unit": "ug/cm^2" + }, + "FPG Content": { + "loValue": 100 + } + }, + "result": { + "unit": 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}, + "citation": { + "title": "http://dx.doi.org/10.1021/tx800289z", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Particle Size", + "guideline": [ + "" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "TESTMAT_FORM": null + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loQualifier": ">=", + "loValue": 10, + "upQualifier": "<=", + "upValue": 20 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-c2ab6def-8305-3b78-958a-4657b3363e11.json 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"r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "PARTICLE SIZE", + "conditions": { + "Remark": null, + "SEQ_NUM": null + }, + "result": { + "unit": "nm", + "loValue": 142 + } + } + ] +} diff --git a/test/data/enm/study-NWKI-c35f0f16-4616-3ec6-a142-4d274add68a2.json b/test/data/enm/study-NWKI-c35f0f16-4616-3ec6-a142-4d274add68a2.json new file mode 100644 index 0000000..656e8d5 --- /dev/null +++ b/test/data/enm/study-NWKI-c35f0f16-4616-3ec6-a142-4d274add68a2.json @@ -0,0 +1,57 @@ +{ + "uuid": "NWKI-4ed9f2c7-b2a3-44b9-ac42-cccc38e89ac8", + "owner": { + "substance": { + "uuid": "NWKI-c35f0f16-4616-3ec6-a142-4d274add68a2" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.1021/nn3010087", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + 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a/test/data/enm/study-NWKI-ff85c0ea-c908-35c8-9f1c-bfd037800a31.json b/test/data/enm/study-NWKI-ff85c0ea-c908-35c8-9f1c-bfd037800a31.json new file mode 100644 index 0000000..d477778 --- /dev/null +++ b/test/data/enm/study-NWKI-ff85c0ea-c908-35c8-9f1c-bfd037800a31.json @@ -0,0 +1,58 @@ +{ + "uuid": "NWKI-e33e16a3-e454-4cb2-bcc4-38d655c6eebd", + "owner": { + "substance": { + "uuid": "NWKI-ff85c0ea-c908-35c8-9f1c-bfd037800a31" + }, + "company": { + "uuid": "NWKI-9f4e86d0-c85d-3e83-8249-a856659087da", + "name": "NanoWiki" + } + }, + "citation": { + "title": "http://dx.doi.org/10.3762/bjnano.5.151", + "year": "0", + "owner": "NanoWiki" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "PC_GRANULOMETRY_SECTION", + "term": "http://purl.obolibrary.org/obo/CHMO_0002119", + "title": "4.5 Particle size distribution (Granulometry)" + }, + "endpoint": "Primary Particle Size", + "guideline": [ + "TEM" + ] + }, + "parameters": { + "DISTRIBUTION_TYPE": null, + "Method type": 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"result": "round" + }, + "effects": [ + { + "endpoint": "ASPECT RATIO", + "conditions": { + }, + "result": { + "unit": null, + "loValue": 1 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-0d71a921-0e8d-3f25-8deb-20478b7e884b.json b/test/data/enm/study-XLSX-0d71a921-0e8d-3f25-8deb-20478b7e884b.json new file mode 100644 index 0000000..a30e485 --- /dev/null +++ b/test/data/enm/study-XLSX-0d71a921-0e8d-3f25-8deb-20478b7e884b.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-f752a9e6-816d-4d83-8211-55fef5b0d24e", + "owner": { + "substance": { + "uuid": "XLSX-0d71a921-0e8d-3f25-8deb-20478b7e884b" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "127", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ZETA_POTENTIAL_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1302", + "title": "4.29 Nanomaterial zeta potential" + }, + "endpoint": "127", + "guideline": [ + "Zeta Potential" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "ZETA POTENTIAL", + "conditions": { + }, + "result": { + "unit": "mV", + "loValue": -32 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-12620892-23e5-37f4-9644-a82c4240d695.json b/test/data/enm/study-XLSX-12620892-23e5-37f4-9644-a82c4240d695.json new file mode 100644 index 0000000..a1d3fb5 --- /dev/null +++ b/test/data/enm/study-XLSX-12620892-23e5-37f4-9644-a82c4240d695.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-7801fc1f-f78e-439b-86d8-605aac5829f9", + "owner": { + "substance": { + "uuid": "XLSX-12620892-23e5-37f4-9644-a82c4240d695" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" 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+++ b/test/data/enm/study-XLSX-190fb54d-9b65-3d58-b65e-b3aae9a1f182.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-f861ae7e-cfc8-4406-b8c1-2bab45c9be8f", + "owner": { + "substance": { + "uuid": "XLSX-190fb54d-9b65-3d58-b65e-b3aae9a1f182" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "154", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "SPECIFIC_SURFACE_AREA_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1235", + "title": "4.28 Nanomaterial specific surface area" + }, + "endpoint": "154", + "guideline": [ + "SPECIFIC SURFACE AREA" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "SPECIFIC_SURFACE_AREA", + "conditions": { + }, + "result": { + "unit": null, + "loValue": 99 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-1a8410a0-279c-3e82-bdfb-ce96b534df9b.json b/test/data/enm/study-XLSX-1a8410a0-279c-3e82-bdfb-ce96b534df9b.json new file mode 100644 index 0000000..c5395bc --- /dev/null +++ b/test/data/enm/study-XLSX-1a8410a0-279c-3e82-bdfb-ce96b534df9b.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-c324c907-a6cb-4c9f-aa3b-c19f186edf94", + "owner": { + "substance": { + "uuid": "XLSX-1a8410a0-279c-3e82-bdfb-ce96b534df9b" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "020", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ASPECT_RATIO_SHAPE_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_274", + "title": "4.27 Nanomaterial aspect ratio/shape" + }, + "endpoint": "020", + "guideline": 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"uuid": "XLSX-e56d0702-5753-4c06-91bc-637bf5355ce3", + "owner": { + "substance": { + "uuid": "XLSX-38666e26-8f8e-37a4-b97c-728a1e5aa0f2" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "038", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ASPECT_RATIO_SHAPE_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_274", + "title": "4.27 Nanomaterial aspect ratio/shape" + }, + "endpoint": "038", + "guideline": [ + "Shape" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": "highly bend, entangled" + }, + "effects": [ + { + "endpoint": "ASPECT RATIO", + "conditions": { + }, + "result": { + "unit": null, + "loValue": 125 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-3dac4f9c-8c47-3085-9781-e70583adb12f.json b/test/data/enm/study-XLSX-3dac4f9c-8c47-3085-9781-e70583adb12f.json new file mode 100644 index 0000000..09fc445 --- /dev/null +++ b/test/data/enm/study-XLSX-3dac4f9c-8c47-3085-9781-e70583adb12f.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-f4aabeaa-a7f4-4dfe-ab3b-f554a313d175", + "owner": { + "substance": { + "uuid": "XLSX-3dac4f9c-8c47-3085-9781-e70583adb12f" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "167", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ASPECT_RATIO_SHAPE_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_274", + "title": "4.27 Nanomaterial aspect ratio/shape" + }, + "endpoint": "167", + "guideline": [ + "Shape" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + 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"title": "107", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ZETA_POTENTIAL_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_1302", + "title": "4.29 Nanomaterial zeta potential" + }, + "endpoint": "107", + "guideline": [ + "Zeta Potential" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": null + }, + "effects": [ + { + "endpoint": "ZETA POTENTIAL", + "conditions": { + }, + "result": { + "unit": "mV", + "loValue": -40 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-498d791a-4c0f-3eab-bb2b-bd554637d9af.json b/test/data/enm/study-XLSX-498d791a-4c0f-3eab-bb2b-bd554637d9af.json new file mode 100644 index 0000000..f720af4 --- /dev/null +++ b/test/data/enm/study-XLSX-498d791a-4c0f-3eab-bb2b-bd554637d9af.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-e7aa3d69-db5c-4a6f-b562-22643a5eaae8", + "owner": { + "substance": { + "uuid": "XLSX-498d791a-4c0f-3eab-bb2b-bd554637d9af" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "135", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ASPECT_RATIO_SHAPE_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_274", + "title": "4.27 Nanomaterial aspect ratio/shape" + }, + "endpoint": "135", + "guideline": [ + "Shape" + ] + }, + "parameters": { + }, + "reliability": { + "r_isRobustStudy": "false", + "r_isUsedforClassification": "false", + "r_isUsedforMSDS": "false", + "r_purposeFlag": null, + "r_studyResultType": "experimental result", + "r_value": null + }, + "interpretation": { + "result": "Two structures found; type 1 show agglomerates in the 50–1500 nm range" + }, + "effects": [ + { + "endpoint": "ASPECT RATIO", + "conditions": { + }, + "result": { + "unit": null, + "loValue": 1.524 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-4ceef1bf-5f19-34e7-9d3d-51d65be297d7.json b/test/data/enm/study-XLSX-4ceef1bf-5f19-34e7-9d3d-51d65be297d7.json new file mode 100644 index 0000000..f8cf42c --- /dev/null +++ b/test/data/enm/study-XLSX-4ceef1bf-5f19-34e7-9d3d-51d65be297d7.json @@ -0,0 +1,75 @@ +{ + "uuid": "XLSX-fff71a73-f25e-4783-8660-bdb3aa52cd47", + "owner": { + "substance": { + "uuid": "XLSX-4ceef1bf-5f19-34e7-9d3d-51d65be297d7" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "176", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "TOX", + "category": { + "code": "BAO_0003009_SECTION", + "term": "http://purl.obolibrary.org/obo/BAO_0003009", + "title": "BAO_0003009 Cell Viability Assay" + }, + "endpoint": 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[ + { + "endpoint": "SPECIFIC_SURFACE_AREA", + "conditions": { + }, + "result": { + "unit": null, + "loValue": 298 + } + } + ] +} diff --git a/test/data/enm/study-XLSX-7e2b0550-595b-3427-b6f3-b84211a5c402.json b/test/data/enm/study-XLSX-7e2b0550-595b-3427-b6f3-b84211a5c402.json new file mode 100644 index 0000000..6f74bb6 --- /dev/null +++ b/test/data/enm/study-XLSX-7e2b0550-595b-3427-b6f3-b84211a5c402.json @@ -0,0 +1,53 @@ +{ + "uuid": "XLSX-f9df1a98-6f38-473a-a70f-80dcdf8fa5be", + "owner": { + "substance": { + "uuid": "XLSX-7e2b0550-595b-3427-b6f3-b84211a5c402" + }, + "company": { + "uuid": "XLSX-c4568d50-2e06-3173-95d2-01adb74e6632", + "name": "MODENA" + } + }, + "citation": { + "title": "019", + "year": "2015", + "owner": "MODENA" + }, + "protocol": { + "topcategory": "P-CHEM", + "category": { + "code": "ASPECT_RATIO_SHAPE_SECTION", + "term": "http://purl.bioontology.org/ontology/npo/NPO_274", + "title": "4.27 Nanomaterial aspect ratio/shape" + }, + "endpoint": "019", + "guideline": 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cell membrane damage: Lactate dehydrogenase assay (LDH) (CytoTox 96® Non-radioactive cytotoxicity assay - Promega, G1780) ", + "guideline": [ + "Cytotoxicity using human monocyte-derived macrophages (HMDM)" + ] + }, + "parameters": { + "CHMO:0002774": "N", + "CLO_0000031": "HMDM", + "CLO_0000031 EFO_0004443": "Karolinska University Hospital, Stockholm, Sweden - buffy coats from healthy adult blood donors ", + "Cell culture conditions - Serum": "FBS (Gibco, 10500) ", + "Cell culture conditions - Serum concentration in growth medium": 0.1, + "Cell culture conditions - Serum concentration in treatment medium": "0,05%", + "Cell line/Type - Full name": "Primary human monocyte-derived macrophages (HMDM)", + "Dispersion agent": "water with 0,05% BSA", + "NPO_1952": "Y", + "NPO_1961": "Y", + "NPO_1969 OBI_0000272": "NANOGENOTOX Dispersion protocol (http://www.nanogenotox.eu/files/PDF/web%20nanogenotox%20dispersion%20protocol.pdf) ", + "OBI_0001911 BAO_0000114": "RPMI (Sigma, R0833)" + }, + 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