From ca2bb0f90335b1f2c4ecc28ee423e85b281ffcf0 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Wed, 4 Nov 2015 17:50:17 +0100 Subject: neighbor search delegated to database backend --- test/fminer-long.rb | 3 +++ 1 file changed, 3 insertions(+) (limited to 'test/fminer-long.rb') diff --git a/test/fminer-long.rb b/test/fminer-long.rb index 0f202b4..845ed71 100644 --- a/test/fminer-long.rb +++ b/test/fminer-long.rb @@ -3,6 +3,7 @@ require_relative "setup.rb" class FminerTest < MiniTest::Test def test_fminer_multicell + skip #skip "multicell segfaults" # TODO aborts, probably fminer # or OpenBabel segfault @@ -15,6 +16,7 @@ class FminerTest < MiniTest::Test end def test_fminer_isscan + skip dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) assert_equal feature_dataset.compounds.size, dataset.compounds.size @@ -25,6 +27,7 @@ class FminerTest < MiniTest::Test end def test_fminer_kazius + skip dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") # TODO reactivate default settings feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) -- cgit v1.2.3 From 7c3bd90c26dfeea2db3cf74a1cefc23d8dece7c0 Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Tue, 15 Mar 2016 17:40:40 +0100 Subject: validation tests pass --- test/fminer-long.rb | 41 ----------------------------------------- 1 file changed, 41 deletions(-) delete mode 100644 test/fminer-long.rb (limited to 'test/fminer-long.rb') diff --git a/test/fminer-long.rb b/test/fminer-long.rb deleted file mode 100644 index 845ed71..0000000 --- a/test/fminer-long.rb +++ /dev/null @@ -1,41 +0,0 @@ -require_relative "setup.rb" - -class FminerTest < MiniTest::Test - - def test_fminer_multicell - skip - #skip "multicell segfaults" - # TODO aborts, probably fminer - # or OpenBabel segfault - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) - p feature_dataset.training_parameters - assert_equal dataset.compound_ids, feature_dataset.compound_ids - dataset.delete - feature_dataset.delete - end - - def test_fminer_isscan - skip - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) - assert_equal feature_dataset.compounds.size, dataset.compounds.size - p feature_dataset.features.size - p feature_dataset.training_parameters - dataset.delete - feature_dataset.delete - end - - def test_fminer_kazius - skip - dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv") - # TODO reactivate default settings - feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20) - assert_equal feature_dataset.compounds.size, dataset.compounds.size - feature_dataset = Dataset.find feature_dataset.id - assert feature_dataset.data_entries.size, dataset.compounds.size - dataset.delete - feature_dataset.delete - end - -end -- cgit v1.2.3