From d0850e2983a219da214a67190fe881c7650f532f Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 13 Aug 2015 18:57:11 +0200 Subject: majority of tests working --- test/fminer-long.rb | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) (limited to 'test/fminer-long.rb') diff --git a/test/fminer-long.rb b/test/fminer-long.rb index 826f206..0f202b4 100644 --- a/test/fminer-long.rb +++ b/test/fminer-long.rb @@ -3,13 +3,13 @@ require_relative "setup.rb" class FminerTest < MiniTest::Test def test_fminer_multicell - skip "multicell segfaults" + #skip "multicell segfaults" # TODO aborts, probably fminer # or OpenBabel segfault - dataset = OpenTox::Dataset.new - #multi_cell_call.csv - dataset.upload File.join(DATA_DIR,"multi_cell_call.csv") + dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"multi_cell_call.csv") feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) + p feature_dataset.training_parameters + assert_equal dataset.compound_ids, feature_dataset.compound_ids dataset.delete feature_dataset.delete end @@ -18,7 +18,8 @@ class FminerTest < MiniTest::Test dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv") feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15) assert_equal feature_dataset.compounds.size, dataset.compounds.size - p feature_dataset + p feature_dataset.features.size + p feature_dataset.training_parameters dataset.delete feature_dataset.delete end -- cgit v1.2.3