From 7c3bd90c26dfeea2db3cf74a1cefc23d8dece7c0 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Tue, 15 Mar 2016 17:40:40 +0100
Subject: validation tests pass

---
 test/fminer.rb | 52 ----------------------------------------------------
 1 file changed, 52 deletions(-)
 delete mode 100644 test/fminer.rb

(limited to 'test/fminer.rb')

diff --git a/test/fminer.rb b/test/fminer.rb
deleted file mode 100644
index 16e1f9e..0000000
--- a/test/fminer.rb
+++ /dev/null
@@ -1,52 +0,0 @@
-require_relative "setup.rb"
-
-class FminerTest < MiniTest::Test
-
-  def test_fminer_bbrc
-    dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"hamster_carcinogenicity.csv")
-    refute_nil dataset.id
-    feature_dataset = OpenTox::Algorithm::Fminer.bbrc dataset
-    feature_dataset = Dataset.find feature_dataset.id
-    assert_equal dataset.compounds.size, feature_dataset.compounds.size
-    # TODO: fminer calculates 62 instead of 54 features
-    # it is unclear which commit changed the numbers (occurs with old libraries/mongodb branch too
-    # modification of Compound to use smiles instead of inchis seems to have no effect
-    #assert_equal 54, feature_dataset.features.size
-    #assert_equal "C-C-C=C", feature_dataset.features.first.smarts
-    compounds = feature_dataset.compounds
-    smarts = feature_dataset.features
-    smarts.each do |smart|
-      assert smart.p_value.round(2) >= 0.95
-    end
-    match = OpenTox::Algorithm::Descriptor.smarts_match compounds, smarts
-    feature_dataset.data_entries.each_with_index do |fingerprint,i|
-      assert_equal match[i], fingerprint
-    end
-
-    dataset.delete
-    feature_dataset.delete
-  end
-
-  def test_fminer_last
-    skip "last features have to be activated"
-    dataset = OpenTox::Dataset.new
-    dataset.upload File.join(DATA_DIR,"hamster_carcinogenicity.csv")
-    feature_dataset = OpenTox::Algorithm::Fminer.last :dataset => dataset
-    assert_equal dataset.compounds.size, feature_dataset.compounds.size
-    assert_equal 21, feature_dataset.features.size
-    assert_equal '[#6&A]-[#6&a]:[#6&a]:[#6&a]:[#6&a]:[#6&a]', feature_dataset.features.first.smarts
-
-    compounds = feature_dataset.compounds
-    smarts = feature_dataset.features.collect{|f| f.smarts}
-    match = OpenTox::Algorithm::Descriptor.smarts_match compounds, smarts
-    compounds.each_with_index do |c,i|
-      smarts.each_with_index do |s,j|
-        assert_equal match[i][j], feature_dataset.data_entries[i][j].to_i
-      end
-    end
-
-    dataset.delete
-    feature_dataset.delete
-  end
-
-end
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