From 48234554ea99b972a01718ac36c4e8332dd9159b Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.ch>
Date: Sat, 7 May 2016 10:34:03 +0200
Subject: -log10 for regression datasets, test cleanups

---
 test/lazar-physchem-short.rb | 31 -------------------------------
 1 file changed, 31 deletions(-)
 delete mode 100644 test/lazar-physchem-short.rb

(limited to 'test/lazar-physchem-short.rb')

diff --git a/test/lazar-physchem-short.rb b/test/lazar-physchem-short.rb
deleted file mode 100644
index d6c2159..0000000
--- a/test/lazar-physchem-short.rb
+++ /dev/null
@@ -1,31 +0,0 @@
-require_relative "setup.rb"
-
-class LazarPhyschemDescriptorTest < MiniTest::Test
-  def test_epafhm
-
-    skip
-    @descriptors = OpenTox::Algorithm::Descriptor::OBDESCRIPTORS.keys
-    refute_empty @descriptors
-
-    # UPLOAD DATA
-    training_dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"EPAFHM.medi.csv")
-    feature_dataset = Algorithm::Descriptor.physchem training_dataset, @descriptors
-    scaled_feature_dataset = feature_dataset.scale
-    model = Model::LazarRegression.create training_dataset
-    model.neighbor_algorithm = "physchem_neighbors"
-    model.neighbor_algorithm_parameters = {
-      :feature_calculation_algorithm => "OpenTox::Algorithm::Descriptor.physchem",
-      :descriptors => @descriptors,
-      :feature_dataset_id => scaled_feature_dataset.id,
-      :min_sim => 0.3
-    }
-    model.save
-    compound = Compound.from_smiles "CC(C)(C)CN"
-    prediction = model.predict compound
-    refute_nil prediction[:value]
-    refute_nil prediction[:confidence]
-    prediction[:neighbors].each do |line|
-      assert_operator line[1], :>, 0.3
-    end
-  end
-end
-- 
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