From ab7b37541b4f8a762be737009631d3eefd898b4a Mon Sep 17 00:00:00 2001 From: Christoph Helma Date: Thu, 5 May 2016 16:14:02 +0200 Subject: ambit mirror, import from mirrored json, proteomics import --- test/nanoparticles.rb | 29 +++++++++++++++++------------ 1 file changed, 17 insertions(+), 12 deletions(-) (limited to 'test') diff --git a/test/nanoparticles.rb b/test/nanoparticles.rb index 7308a83..69cfd30 100644 --- a/test/nanoparticles.rb +++ b/test/nanoparticles.rb @@ -4,22 +4,27 @@ require_relative "setup.rb" class NanoparticleTest < MiniTest::Test def setup - `mongorestore --db=development #{File.join(File.dirname(__FILE__),"..","dump","production")}` + #`mongorestore --db=development #{File.join(File.dirname(__FILE__),"..","dump","production")}` + end + + def test_mirror + Import::Enanomapper.mirror File.join(File.dirname(__FILE__),"..","data") end def test_import - skip - dataset_ids = Import::Enanomapper.import - assert_operator Nanoparticle.count , :>, 570, "Only #{Nanoparticle.count} nanoparticles imported" - assert_operator dataset_ids.size, :>, 8, "Only #{dataset_ids.size} bundles imported" - assert dataset_ids.collect{|d| Dataset.find(d).name}.include? ("NanoWiki") - assert dataset_ids.collect{|d| Dataset.find(d).name}.include? ("Protein Corona Fingerprinting Predicts the Cellular Interaction of Gold and Silver Nanoparticles") - p dataset_ids.collect{|d| {d => Dataset.find(d).name}} - dataset_ids.collect do |d| - d = Dataset.find(d) + Import::Enanomapper.import File.join(File.dirname(__FILE__),"..","data") +# skip +# dataset_ids = Import::Enanomapper.import +# assert_operator Nanoparticle.count , :>, 570, "Only #{Nanoparticle.count} nanoparticles imported" +# assert_operator dataset_ids.size, :>, 8, "Only #{dataset_ids.size} bundles imported" +# assert dataset_ids.collect{|d| Dataset.find(d).name}.include? ("NanoWiki") +# assert dataset_ids.collect{|d| Dataset.find(d).name}.include? ("Protein Corona Fingerprinting Predicts the Cellular Interaction of Gold and Silver Nanoparticles") +# p dataset_ids.collect{|d| {d => Dataset.find(d).name}} +# dataset_ids.collect do |d| +# d = Dataset.find(d) #p d.name #puts d.to_csv - end +# end end def test_summaries @@ -35,7 +40,7 @@ class NanoparticleTest < MiniTest::Test toxcounts[t] ||= 0 toxcounts[t] += 1#v.uniq.size end - np.physchem_descriptors.each do |t,v| + np.physchem.each do |t,v| pccounts[t] ||= 0 pccounts[t] += 1#v.uniq.size end -- cgit v1.2.3