From e5b63460933112573a4e5ed1f2825c9267370ce0 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.de>
Date: Mon, 17 Aug 2009 11:04:41 +0200
Subject: lazar prediction class added, tests finished

---
 test/opentox-ruby-api-wrapper_test.rb | 46 +++++++++++------------------------
 test/start-local-webservices.rb       | 13 ++++++++++
 2 files changed, 27 insertions(+), 32 deletions(-)
 create mode 100755 test/start-local-webservices.rb

(limited to 'test')

diff --git a/test/opentox-ruby-api-wrapper_test.rb b/test/opentox-ruby-api-wrapper_test.rb
index 256a06a..6b09c4a 100644
--- a/test/opentox-ruby-api-wrapper_test.rb
+++ b/test/opentox-ruby-api-wrapper_test.rb
@@ -3,62 +3,44 @@ require 'test_helper'
 class OpentoxRubyApiWrapperTest < Test::Unit::TestCase
 
 	def setup
-		@pids = []
-		port = 5000
-		[ "opentox-compound", "opentox-feature" , "opentox-dataset" , "opentox-fminer" , "opentox-lazar" ].each do |component|
-			ENV[component.upcase.gsub(/-/,'_')] = "http://localhost:#{port}/"
-=begin
-			Dir.chdir ENV['HOME'] + '/webservices/' + component
-			Dir["test.sqlite3"].each { |f| FileUtils.rm_rf(f) }
-			file = 'application.rb'
-			@pids << fork {`urxvt -title #{component} -e thin --debug --rackup config.ru start -p #{port} -e test`}
-			Process.detach(@pids.last)
-=end
-			port += 1
-		end
-	end
-
-=begin
-	def teardown
-		@pids.each do |pid|
-			begin
-				Process.kill(9,pid)
-				puts "killed " + pid.to_s
-			rescue
-				puts "failed to kill process" + pid.to_s
+		if ENV['LOCAL']
+			port = 5000
+			[ "opentox-compound", "opentox-feature" , "opentox-dataset" , "opentox-fminer" , "opentox-lazar" ].each do |component|
+				ENV[component.upcase.gsub(/-/,'_')] = "http://localhost:#{port}/"
+				port += 1
 			end
 		end
 	end
-=end
 
 	def test_create_dataset_and_model_and_make_a_prediction
-		#sleep 15
 		dataset = OpenTox::Dataset.new :name => "Hamster Carcinogenicity", :filename => "test/hamster_carcinogenicity.csv"
 		puts dataset.uri
 		wait_for_completion dataset
 		assert_match(/#{ENV['OPENTOX_DATASET']}\d+$/,dataset.uri)
 		assert_equal("Hamster Carcinogenicity",dataset.name)
+		assert_equal(true,dataset.finished?)
 		lazar = OpenTox::Lazar.new :dataset_uri => dataset.uri
 		puts lazar.uri
 		wait_for_completion lazar
+		assert_equal(true,lazar.finished?)
 		assert_match(/#{ENV['OPENTOX_LAZAR']}model\/\d+$/,lazar.uri)
 		query_structure = OpenTox::Compound.new :smiles => 'c1ccccc1NN'
+		puts query_structure.uri
 		prediction = lazar.predict query_structure
 		puts prediction.uri
 		wait_for_completion prediction
-		puts prediction.to_yaml
+		puts prediction.classification
+		puts prediction.confidence
+		puts prediction.neighbors
+		puts prediction.features
 		assert_equal(true, prediction.classification)
-		assert_match(/\d+/, prediction.classification)
+		assert_match(/0\.\d+/, prediction.confidence.to_s)
 	end
 
 end
 
 def wait_for_completion(object)
-	timeout = 60
-	time = 0 
-	while (!object.finished? and time < timeout)
+	while (!object.finished?)
 		sleep 1
-		time += 1
 	end
-	puts "timeout" if timeout >= 60
 end
diff --git a/test/start-local-webservices.rb b/test/start-local-webservices.rb
new file mode 100755
index 0000000..66dea29
--- /dev/null
+++ b/test/start-local-webservices.rb
@@ -0,0 +1,13 @@
+#!/usr/bin/env ruby
+require 'fileutils'
+
+port = 5000
+[ "opentox-compound", "opentox-feature" , "opentox-dataset" , "opentox-fminer" , "opentox-lazar" ].each do |component|
+	ENV[component.upcase.gsub(/-/,'_')] = "http://localhost:#{port}/"
+	Dir.chdir ENV['HOME'] + '/webservices/' + component
+	Dir["test.sqlite3"].each { |f| FileUtils.rm_rf(f) }
+	file = 'application.rb'
+	pid = fork {`urxvt -title #{component} -e thin --debug --rackup config.ru start -p #{port} -e test`}
+	Process.detach(pid)
+	port += 1
+end
-- 
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