#!/usr/bin/env ruby

dir = ARGV[0]
fp = []
endpoint_name = File.read(File.join dir,"dependent_variable_name").chomp
endpoints = File.open(File.join dir,"dependent_variables").readlines.collect{|v| v.to_i}
endpoint_values = File.open(File.join dir,"dependent_variable_values").readlines
smiles = []

File.open(File.join dir,"independent_variables").each_line do |l|
  l = l.chomp.split(",")
  smiles << l.shift
  fp << l
end

fp_names = fp.flatten.sort.uniq
header = ["Canonical SMILES"]+fp_names+[endpoint_name]
puts header.join(",")

(0..smiles.size-1).each do |i|
  line = [smiles[i]]+fp_names.collect{|n| fp[i].include?(n) ? 1 : 0}+[endpoint_values[endpoints[i]]]
  puts line.join(",")
end