require 'fileutils'
=begin
# R setup
rlib = File.expand_path(File.join(File.dirname(__FILE__),"..","R"))
# should work on POSIX including os x
# http://stackoverflow.com/questions/19619582/number-of-processors-cores-in-command-line
NR_CORES = `getconf _NPROCESSORS_ONLN`.to_i
R = Rserve::Connection.new
R.eval ".libPaths('#{rlib}')"
R.eval "
suppressPackageStartupMessages({
  library(labeling,lib=\"#{rlib}\")
  library(iterators,lib=\"#{rlib}\")
  library(foreach,lib=\"#{rlib}\")
  library(ggplot2,lib=\"#{rlib}\")
  library(grid,lib=\"#{rlib}\")
  library(gridExtra,lib=\"#{rlib}\")
  library(pls,lib=\"#{rlib}\")
  library(caret,lib=\"#{rlib}\")
  library(doMC,lib=\"#{rlib}\")
  library(randomForest,lib=\"#{rlib}\")
  library(plyr,lib=\"#{rlib}\")
  registerDoMC(#{NR_CORES})
})
"

PUBCHEM_URI = "https://pubchem.ncbi.nlm.nih.gov/rest/pug/"
=end

[ # be aware of the require sequence as it affects class/method overwrites
  "array.rb",
#  "overwrite.rb",
#  "rest-client-wrapper.rb", 
#  "opentox.rb",
#  "feature.rb",
#  "physchem.rb",
#  "substance.rb",
  "compound.rb",
#  "nanoparticle.rb",
  "dataset.rb",
#  "algorithm.rb",
  "similarity.rb",
#  "feature_selection.rb",
  "model.rb",
  "statistics.rb",
#  "classification.rb",
#  "regression.rb",
#  "caret.rb",
#  "validation-statistics.rb",
#  "validation.rb",
#  "train-test-validation.rb",
#  "leave-one-out-validation.rb",
#  "crossvalidation.rb",
#  "download.rb",
#  "import.rb",
].each{ |f| require_relative f }