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require_relative '../lib/lazar.rb'
include OpenTox
#get list of bundle URIs
bundles = JSON.parse(RestClientWrapper.get('https://data.enanomapper.net/bundle?media=application%2Fjson'))["dataset"]
bundles.each do |bundle|
uri = bundle["URI"]
nanoparticles = JSON.parse(RestClientWrapper.get(bundle["dataset"]+"?media=application%2Fjson"))["dataEntry"]
features = JSON.parse(RestClientWrapper.get(bundle["property"]+"?media=application%2Fjson"))["feature"]
nanoparticles.each do |np|
nanoparticle = Nanoparticle.find_or_create_by(
:name => np["values"]["https://data.enanomapper.net/identifier/name"],
:source => np["compound"]["URI"],
)
np["composition"].each do |comp|
case comp["relation"]
when "HAS_CORE"
nanoparticle[:core] = comp["component"]["compound"]["URI"]
when "HAS_COATING"
nanoparticle[:coating] ||= []
nanoparticle[:coating] << comp["component"]["compound"]["URI"]
end
end if np["composition"]
np["values"].each do |u,v|
if u.match(/property/)
name, unit = nil
features.each do |uri,feat|
if u.match(/#{uri}/)
name = feat["title"]
unit = feat["units"]
end
end
feature = Feature.find_or_create_by(
:name => name,
:unit => unit,
#:source => uri
)
nanoparticle[:features] ||= {}
if v.size == 1 and v.first.keys == ["loValue"]
nanoparticle[:features][feature.id] = v.first["loValue"]
else
#TODO
end
end
end
p nanoparticle
nanoparticle.save
end
end
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