1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
module OpenTox
module Algorithm
class Fminer < OpenTox
# Create a new dataset with BBRC features
def self.create(params)
puts params[:dataset_uri]
uri = RestClient.post File.join(@@config[:services]["opentox-algorithm"],'fminer'), :dataset_uri => params[:dataset_uri]
print "fminer finsihed "
puts uri
uri
end
end
class Similarity < OpenTox
def self.tanimoto(dataset1,compound1,dataset2,compound2)
RestClient.get File.join(@@config[:services]["opentox-algorithm"], 'tanimoto/dataset',dataset1.name,compound1.inchi,'dataset',dataset2.name,compound2.inchi)
end
def self.weighted_tanimoto(dataset1,compound1,dataset2,compound2)
# URI.escape does not work here
uri = File.join(@@config[:services]["opentox-algorithm"], 'weighted_tanimoto/dataset',CGI.escape(dataset1.name),'compound',CGI.escape(compound1.inchi),'dataset',CGI.escape(dataset2.name),'compound',CGI.escape(compound2.inchi))
RestClient.get uri
end
end
class Lazar < OpenTox
# Create a new prediction model from a dataset
def self.create(params)
RestClient.post File.join(@@config[:services]["opentox-algorithm"],"lazar_classification"), params
end
end
end
end
|
