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|
require 'logger'
# set default environment
ENV['RACK_ENV'] = 'test' unless ENV['RACK_ENV']
# load/setup configuration
basedir = File.join(ENV['HOME'], ".opentox")
config_dir = File.join(basedir, "config")
config_file = File.join(config_dir, "#{ENV['RACK_ENV']}.yaml")
user_file = File.join(config_dir, "users.yaml")
TMP_DIR = File.join(basedir, "tmp")
LOG_DIR = File.join(basedir, "log")
if File.exist?(config_file)
@@config = YAML.load_file(config_file)
else
FileUtils.mkdir_p TMP_DIR
FileUtils.mkdir_p LOG_DIR
FileUtils.mkdir_p config_dir
FileUtils.cp(File.join(File.dirname(__FILE__), 'templates/config.yaml'), config_file)
puts "Please edit #{config_file} and restart your application."
exit
end
# database
if @@config[:database]
['dm-core', 'dm-serializer', 'dm-timestamps', 'dm-types'].each{|lib| require lib }
case @@config[:database][:adapter]
when /sqlite/i
db_dir = File.join(basedir, "db")
FileUtils.mkdir_p db_dir
DataMapper::setup(:default, "sqlite3://#{db_dir}/opentox.sqlite3")
else
DataMapper.setup(:default, {
:adapter => @@config[:database][:adapter],
:database => @@config[:database][:database],
:username => @@config[:database][:username],
:password => @@config[:database][:password],
:host => @@config[:database][:host]})
end
end
# mail
#load File.join config_dir,"mail.rb"
# hack: store sinatra in global var to make url_for and halt methods accessible
before {$sinatra = self unless $sinatra}
class Sinatra::Base
# overwriting halt to log halts (!= 202)
def halt(*response)
LOGGER.error "halt "+response.first.to_s+" "+(response.size>1 ? response[1].to_s : "") if response and response.first and response.first >= 300
# orig sinatra code:
response = response.first if response.length == 1
throw :halt, response
end
end
# logging
class MyLogger < Logger
def pwd
path = Dir.pwd.to_s
index = path.rindex(/\//)
return path if index==nil
path[(index+1)..-1]
end
def trace()
lines = caller(0)
n = 2
line = lines[n]
while (line =~ /spork.rb/ or line =~ /as_task/ or line =~ /environment.rb/)
n += 1
line = lines[n]
end
index = line.rindex(/\/.*\.rb/)
return line if index==nil
line[index..-1]
end
def format(msg)
pwd.ljust(18)+" :: "+msg.to_s+" :: "+trace+" :: "+ENV['REMOTE_ADDR'].to_s
end
def debug(msg)
super format(msg)
end
def info(msg)
super format(msg)
end
def warn(msg)
super format(msg)
end
def error(msg)
super format(msg)
end
end
logfile = "#{LOG_DIR}/#{ENV["RACK_ENV"]}.log"
LOGGER = MyLogger.new(logfile,'daily') # daily rotation
#LOGGER = MyLogger.new(STDOUT)
#LOGGER.datetime_format = "%Y-%m-%d %H:%M:%S "
#LOGGER.level = Logger::DEBUG
if File.exist?(user_file)
@@users = YAML.load_file(user_file)
else
FileUtils.cp(File.join(File.dirname(__FILE__), 'templates/users.yaml'), user_file)
puts "Please edit #{user_file} and restart your application."
exit
end
begin
0 < @@users[:users].keys.length
rescue
raise "Please edit #{user_file} and restart your application. Create at least one user with password."
end
# RDF namespaces
RDF = Redland::Namespace.new 'http://www.w3.org/1999/02/22-rdf-syntax-ns#'
OWL = Redland::Namespace.new 'http://www.w3.org/2002/07/owl#'
DC = Redland::Namespace.new 'http://purl.org/dc/elements/1.1/'
OT = Redland::Namespace.new 'http://www.opentox.org/api/1.1#'
XML = Redland::Namespace.new 'http://www.w3.org/2001/XMLSchema#'
# Regular expressions for parsing classification data
TRUE_REGEXP = /^(true|active|$1^)/
FALSE_REGEXP = /^(false|inactive|$0^)/
|
