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LAZAR_BIN = ../../bin
PARAMETERS = independent_variable_type dependent_variable_type dependent_variable_values similarity_thresholds
all: crossvalidation/summaries metadata.json
# Crossvalidation
crossvalidation/summaries: crossvalidation
$(LAZAR_BIN)/classification_summary.rb crossvalidation
crossvalidation: independent_variables
$(LAZAR_BIN)/classification_crossvalidation.rb .
# Model
independent_variables: GenoTox-database.csv $(METADATA)
$(LAZAR_BIN)/scale_independent_variables.rb $<
# Metadata
metadata.json:
echo '{"species":"Salmonella typhimurium","endpoint":"Mutagenicity","source":"http://cheminformatics.org/datasets/bursi/cas_4337.zip, http://doc.ml.tu-berlin.de/toxbenchmark/Mutagenicity_N6512.csv, https://data.europa.eu/euodp/data/storage/f/2017-07-19T142131/GENOTOX data and dictionary.xls","qmrf":{"group":"QMRF 4.10. Mutagenicity","name":"OECD 471 Bacterial Reverse Mutation Test"}}' > $@
# Model parameters
independent_variable_type:
echo "numeric" > $@
dependent_variable_type:
echo "binary" > $@
dependent_variable_values:
echo -e "\"0\"\n\"1\"" > $@
similarity_thresholds:
echo -e "0.2\n0.5" > $@
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