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require_relative "setup.rb"
class FminerTest < MiniTest::Test
def test_fminer_multicell
skip "multicell segfaults"
# TODO aborts, probably fminer
# or OpenBabel segfault
dataset = OpenTox::Dataset.new
#multi_cell_call.csv
dataset.upload File.join(DATA_DIR,"multi_cell_call.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
dataset.delete
feature_dataset.delete
end
def test_fminer_isscan
dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"ISSCAN-multi.csv")
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset)#, :min_frequency => 15)
assert_equal feature_dataset.compounds.size, dataset.compounds.size
p feature_dataset
dataset.delete
feature_dataset.delete
end
def test_fminer_kazius
dataset = OpenTox::Dataset.from_csv_file File.join(DATA_DIR,"kazius.csv")
# TODO reactivate default settings
feature_dataset = OpenTox::Algorithm::Fminer.bbrc(dataset, :min_frequency => 20)
assert_equal feature_dataset.compounds.size, dataset.compounds.size
feature_dataset = Dataset.find feature_dataset.id
assert feature_dataset.data_entries.size, dataset.compounds.size
dataset.delete
feature_dataset.delete
end
end
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