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require_relative "setup.rb"
class NanoparticleTest < MiniTest::Test
def test_import
dataset_ids = Import::Enanomapper.import
assert_operator Nanoparticle.count , :>, 570, "Only #{Nanoparticle.count} nanoparticles imported"
assert_operator dataset_ids.size, :>, 8, "Only #{dataset_ids.size} bundles imported"
assert dataset_ids.collect{|d| Dataset.find(d).name}.include? ("NanoWiki")
assert dataset_ids.collect{|d| Dataset.find(d).name}.include? ("Protein Corona Fingerprinting Predicts the Cellular Interaction of Gold and Silver Nanoparticles")
p dataset_ids.collect{|d| {d => Dataset.find(d).name}}
dataset_ids.collect do |d|
d = Dataset.find(d)
p d.name
puts d.to_csv
end
end
def test_export
Dataset.all.each do |d|
puts d.to_csv
end
end
def test_create_model
training_dataset = Dataset.find_or_create_by(:name => "Protein Corona Fingerprinting Predicts the Cellular Interaction of Gold and Silver Nanoparticles")
model = Model::LazarRegression.create(training_dataset, :prediction_algorithm => "OpenTox::Algorithm::Regression.local_physchem_regression", :neighbor_algorithm => "nanoparticle_neighbors")
nanoparticle = training_dataset.nanoparticles[-34]
prediction = model.predict nanoparticle
p prediction
refute_nil prediction[:value]
end
end
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