From 3a05be7bec574ac6b9e037509a702f2446de14db Mon Sep 17 00:00:00 2001 From: gebele Date: Tue, 13 Oct 2015 09:11:57 +0000 Subject: updated LOAEL metadata --- create_nestec_models.rb | 10 ++++++---- dump/production/compounds.bson | Bin 853904 -> 857449 bytes dump/production/fs.chunks.bson | Bin 1388508 -> 1811703 bytes dump/production/fs.files.bson | Bin 54600 -> 78673 bytes dump/production/open_tox_model_predictions.bson | Bin 810 -> 817 bytes dump/production/system.indexes.bson | Bin 1005 -> 1005 bytes regression/LOAEL_mmol_corrected_smiles.json | 2 +- 7 files changed, 7 insertions(+), 5 deletions(-) diff --git a/create_nestec_models.rb b/create_nestec_models.rb index 75bc237..0717ce0 100644 --- a/create_nestec_models.rb +++ b/create_nestec_models.rb @@ -2,13 +2,15 @@ require_relative '../lazar/lib/lazar' include OpenTox #$mongo.database.drop #$gridfs = $mongo.database.fs # recreate GridFS indexes - +#=begin [ - #"Rat_TD50.csv", - #"Mouse_TD50.csv", + "Rat_TD50.csv", + "Mouse_TD50.csv", "LOAEL_mmol_corrected_smiles.csv" ].each do |file| file = File.join(File.dirname(__FILE__),"regression",file) Model::Prediction.from_csv_file file end -`mongodump -h 127.0.0.1 -d opentox` +#=end +`mongodump -h 127.0.0.1 -d production` +#`mongorestore --host 127.0.0.1` diff --git a/dump/production/compounds.bson b/dump/production/compounds.bson index e4974fe..2a662fe 100644 Binary files a/dump/production/compounds.bson and b/dump/production/compounds.bson differ diff --git a/dump/production/fs.chunks.bson b/dump/production/fs.chunks.bson index 224d799..3dceeb1 100644 Binary files a/dump/production/fs.chunks.bson and b/dump/production/fs.chunks.bson differ diff --git a/dump/production/fs.files.bson b/dump/production/fs.files.bson index ac97ece..9560a0a 100644 Binary files a/dump/production/fs.files.bson and b/dump/production/fs.files.bson differ diff --git a/dump/production/open_tox_model_predictions.bson b/dump/production/open_tox_model_predictions.bson index a8e2d27..ad22663 100644 Binary files a/dump/production/open_tox_model_predictions.bson and b/dump/production/open_tox_model_predictions.bson differ diff --git a/dump/production/system.indexes.bson b/dump/production/system.indexes.bson index 8e27220..3d07850 100644 Binary files a/dump/production/system.indexes.bson and b/dump/production/system.indexes.bson differ diff --git a/regression/LOAEL_mmol_corrected_smiles.json b/regression/LOAEL_mmol_corrected_smiles.json index 8770690..8faca8b 100644 --- a/regression/LOAEL_mmol_corrected_smiles.json +++ b/regression/LOAEL_mmol_corrected_smiles.json @@ -1,5 +1,5 @@ { - "species": "", + "species": "Rodents", "endpoint": "Lowest observed adverse effect level (LOAEL)", "source": "http://www.epa.gov/ncct/dsstox/sdf_cpdbas.html", "unit": "mmol/kg_bw/day" -- cgit v1.2.3