From 506952dff164c3535ece28859778260f69d748fa Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.de>
Date: Tue, 16 Mar 2010 17:35:34 +0100
Subject: OWL-DL export added

---
 application.rb | 17 -----------------
 lazar.rb       | 29 ++++++++++++++++++++++++++++-
 2 files changed, 28 insertions(+), 18 deletions(-)

diff --git a/application.rb b/application.rb
index b43b11f..14c4aa6 100644
--- a/application.rb
+++ b/application.rb
@@ -21,23 +21,6 @@ get '/?' do # get index of models
 	Model.all.collect{|m| m.uri}.join("\n") + "\n"
 end
 
-get '/:id/?' do
-	model = Model.get(params[:id])
-	halt 404, "Model #{uri} not found." unless model
-	accept = request.env['HTTP_ACCEPT']
-	accept = "application/rdf+xml" if accept == '*/*' or accept =~ /html/ or accept == '' or accept.nil?
-	case accept
-	when "application/rdf+xml"
-		response['Content-Type'] = 'application/rdf+xml'
-		model.owl
-	when /yaml/
-		response['Content-Type'] = 'application/x-yaml'
-		model.yaml
-	else
-		halt 400, "Unsupported MIME type '#{accept}'"
-	end
-end
-
 delete '/:id/?' do
 	begin
 		Model.get(params[:id]).destroy!
diff --git a/lazar.rb b/lazar.rb
index ae32734..51a6c20 100644
--- a/lazar.rb
+++ b/lazar.rb
@@ -38,7 +38,7 @@ class Lazar < Model
 		end
 
 		if (classification != nil)
-			feature_uri = lazar.dependent_variable + "_lazar_prediction"
+			feature_uri = lazar.dependent_variable + "_lazar_classification"
 			prediction.compounds << compound_uri
 			prediction.features << feature_uri 
 			prediction.data[compound_uri] = [] unless prediction.data[compound_uri]
@@ -72,6 +72,33 @@ class Lazar < Model
 		end
 	end
 
+	def to_owl
+		data = YAML.load(yaml)
+		owl = OpenTox::Owl.new 'Model', uri
+		owl.source = "http://github.com/helma/opentox-model"
+		#owl.algorithm = data.algorithm
+		owl.dependentVariable = data.activity_dataset_uri
+		owl.independentVariables = data.feature_dataset_uri
+		owl.rdf
+	end
+
+end
+
+get '/:id/?' do
+	model = Lazar.get(params[:id])
+	halt 404, "Model #{uri} not found." unless model
+	accept = request.env['HTTP_ACCEPT']
+	accept = "application/rdf+xml" if accept == '*/*' or accept =~ /html/ or accept == '' or accept.nil?
+	case accept
+	when "application/rdf+xml"
+		response['Content-Type'] = 'application/rdf+xml'
+		model.to_owl
+	when /yaml/
+		response['Content-Type'] = 'application/x-yaml'
+		model.yaml
+	else
+		halt 400, "Unsupported MIME type '#{accept}'"
+	end
 end
 
 post '/?' do # create model
-- 
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