From 1e5762d6328ba3d261a420adaeeff441cfbd5fa2 Mon Sep 17 00:00:00 2001
From: Christoph Helma <helma@in-silico.de>
Date: Tue, 6 Oct 2009 09:59:50 +0200
Subject: Passes tests in opentox-test

---
 application.rb | 104 ++-------------------------------------------------------
 1 file changed, 3 insertions(+), 101 deletions(-)

(limited to 'application.rb')

diff --git a/application.rb b/application.rb
index b5d8d4e..c86fe66 100644
--- a/application.rb
+++ b/application.rb
@@ -1,103 +1,5 @@
-['rubygems', 'sinatra', 'redis', 'builder', 'opentox-ruby-api-wrapper'].each do |lib|
-	require lib
-end
-
-load File.join(File.dirname(__FILE__), 'model.rb')
-
-case ENV['RACK_ENV']
-when 'production'
-  @@redis = Redis.new :db => 0
-when 'development'
-  @@redis = Redis.new :db => 1
-when 'test'
-  @@redis = Redis.new :db => 2
-  @@redis.flush_db
-end
+require 'rubygems'
+require 'opentox-ruby-api-wrapper'
+require 'lazar.rb'
 
 set :default_content, :yaml
-
-helpers do
-
-	def find
-		uri = uri(params[:splat].first)
-		halt 404, "Dataset \"#{uri}\" not found." unless @model = Model.find(uri)
-	end
-
-	def uri(name)
-		uri = url_for("/model/", :full) + URI.encode(name)
-	end
-end
-
-get '/algorithms' do
-	url_for("/algorithm/classification", :full)
-end
-
-post '/algorithm/classification/?' do # create a model
-	#halt 403, 
-	activity_dataset_uri = OpenTox::Dataset.find(:uri => params[:dataset_uri]).uri
-	feature_dataset_uri = OpenTox::Algorithm::Fminer.create(activity_dataset_uri)
-	Model.create(:activity_dataset_uri => activity_dataset_uri, :feature_dataset_uri => feature_dataset_uri).uri
-end
-
-get '/models/?' do # get index of models
-	Model.find_all.join("\n")
-end
-
-get '/model/*/?' do
-	#halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	find
-	@model.to_yaml
-end
-
-delete '/model/*' do
-	name = params[:splat].first
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	@model.destroy
-	"Model #{params[:id]} succesfully deleted."
-end
-
-post '/model/*' do # create prediction
-	name = params[:splat].first
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	compound = OpenTox::Compound.new :uri => params[:compound_uri]
-	@model.predict(compound)
-end
-
-# PREDICTIONS
-get '/model/*/predictions?' do # get dataset URI
-	name = params[:splat].first
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	# Dataset.find
-end
-
-get '/model/*/prediction/*' do	# display prediction for a compound
-	name = params[:splat].first
-	compound_uri = params[:splat][1]
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	# prediction not found
-	#prediction.to_yaml
-	#xml prediction
-end
-
-get '/model/*/prediction/*/neighbors' do	
-	name = params[:splat].first
-	compound_uri = params[:splat][1]
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	# prediction not found
-	# prediction.neighbors
-end
-
-get '/model/*/prediction/*/features' do	
-	name = params[:splat].first
-	compound_uri = params[:splat][1]
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	# prediction not found
-	# prediction not found
-	# prediction.features
-end
-
-delete '/model/*/prediction/*' do	# display prediction for a compound
-	name = params[:splat].first
-	halt 404, "Model #{name} not found." unless @model = Model.find(request.url)
-	# Prediction.destroy
-end
-- 
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