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OpenTox Fminer
=============
* An OpenTox REST Webservice (http://www.opentox.org)
* Ruby implementation of the lazar algorithm
* Implements a subset of the OpenTox algorithm/model API (http://opentox.org/wiki/opentox/Structure).
* Runs at http://webservices.in-silico.ch/lazar
REST API
Description Method URI Parameters Result Status codes
Get index of all GET /models List of model URIs 200, 500
models
Get model description GET /model{id} XML with model 200, 202, 404, 500
representation
Create a prediction POST / name, file or Model URI 200, 500
model dataset_uri
Delete a model DELETE /{id} 200, 404, 500
Create a prediction POST /{id} compound_uri Prediction URI 200, 404, 500
Get index of all GET /predictions List of prediction 200, 500
predictions URIs
Show a prediction GET /prediction/{id} XML with prediction 200, 202, 404, 500
result
Show neighbors for a GET /prediction/{id} XML with neighbors 200, 404, 500
prediction /neighbors
Show relevant features GET /prediction/{id} XML with relevant 200, 404, 500
for a prediction /features features
Delete a prediction DELETE /prediction/{id} 200, 404, 500
EXAMPLES
Create a prediction model from a tab/whitespace delimited file (smiles activity):
curl -X POST -d name="Hamster carcinogenicity" -d file=@hamster_carcinogenicity http://webservices.in-silico.ch/lazar/models
Create a prediction model from an existing dataset:
curl -X POST -d dataset_uri=http://webservices.in-silico.ch/datasets/1 http://webservices.in-silico.ch/lazar/models
Get model information:
curl http://webservices.in-silico.ch/lazar/model/1 (returns status code 202, if model is still under construction)
Predict a compound:
curl -X POST -d compound_uri=http://webservices.in-silico.ch/compound/N%23%5BN%2B%5Dc1ccccc1%2EF%5BB%2D%5D%28F%29%28F%29F http://webservices.in-silico.ch/lazar/model/1
Show a prediction:
curl http://webservices.in-silico.ch/lazar/prediction/1 (returns status code 202, if prediction is still running)
Show prediction neighbors:
curl http://webservices.in-silico.ch/lazar/prediction/neighbors
Show relevant features for a prediction:
curl http://webservices.in-silico.ch/lazar/prediction/features
INSTALLATION
Run 'rake install' to install the required gems
Copyright (c) 2009 Christoph Helma. See LICENSE for details.
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