diff options
Diffstat (limited to 'scripts/efsa2csv.rb')
-rwxr-xr-x | scripts/efsa2csv.rb | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/scripts/efsa2csv.rb b/scripts/efsa2csv.rb new file mode 100755 index 0000000..56c69df --- /dev/null +++ b/scripts/efsa2csv.rb @@ -0,0 +1,28 @@ +#!/usr/bin/env ruby +require 'csv' +require_relative '../../lazar/lib/lazar.rb' + +i = 0 +db = {} +CSV.foreach(ARGV[0]) do |row| + begin + if i > 0 and row[11] + c = OpenTox::Compound.from_smiles(row[11]).smiles + if row[24].match(/Salmonella/i) + if row[25].match("TA 98") or row[25].match("TA 100") + if row[33].match(/Positiv/i) + db[c] = 1 # at least one positive result in TA 98 or TA 100 + elsif row[33].match(/Negativ/i) + db[c] ||= 0 + end + end + end + end + rescue + end + i += 1 +end + +dm.each do |s,v| + puts [s,v].join "," +end |